Hb_002078_210

Information

Type -
Description -
Location Contig2078: 155107-157375
Sequence    

Annotation

kegg
ID rcu:RCOM_1080530
description cytochrome P450, putative (EC:1.14.13.88)
nr
ID XP_012085673.1
description PREDICTED: cytochrome P450 78A5-like [Jatropha curcas]
swissprot
ID Q9LMX7
description Cytochrome P450 78A5 OS=Arabidopsis thaliana GN=CYP78A5 PE=2 SV=1
trembl
ID B9RMF1
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_1080530 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 78a5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21436: 155070-157578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_210 0.0 - - PREDICTED: cytochrome P450 78A5-like [Jatropha curcas]
2 Hb_000318_320 0.1130639192 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
3 Hb_011609_060 0.119291106 - - PREDICTED: cytokinin hydroxylase [Jatropha curcas]
4 Hb_092044_010 0.1267239814 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
5 Hb_170979_010 0.1327338021 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
6 Hb_002107_080 0.133108357 - - JHL20J20.3 [Jatropha curcas]
7 Hb_000984_120 0.1398404042 - - receptor protein kinase, putative [Ricinus communis]
8 Hb_000072_310 0.1414247771 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
9 Hb_002420_030 0.1479016575 - - Disease resistance protein RPS5, putative [Ricinus communis]
10 Hb_052530_030 0.1565745514 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
11 Hb_010028_010 0.1595700391 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
12 Hb_007235_040 0.1596503268 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_131957_010 0.1605753442 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
14 Hb_085910_010 0.1621747128 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
15 Hb_002639_090 0.1624562917 - - hypothetical protein JCGZ_08134 [Jatropha curcas]
16 Hb_000206_280 0.1628742963 - - Uncharacterized protein TCM_031897 [Theobroma cacao]
17 Hb_023502_010 0.1634376402 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
18 Hb_165552_020 0.1635494129 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
19 Hb_012753_100 0.1646744263 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007728_010 0.1668867982 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]

Gene co-expression network

sample Hb_002078_210 Hb_002078_210 Hb_000318_320 Hb_000318_320 Hb_002078_210--Hb_000318_320 Hb_011609_060 Hb_011609_060 Hb_002078_210--Hb_011609_060 Hb_092044_010 Hb_092044_010 Hb_002078_210--Hb_092044_010 Hb_170979_010 Hb_170979_010 Hb_002078_210--Hb_170979_010 Hb_002107_080 Hb_002107_080 Hb_002078_210--Hb_002107_080 Hb_000984_120 Hb_000984_120 Hb_002078_210--Hb_000984_120 Hb_077562_010 Hb_077562_010 Hb_000318_320--Hb_077562_010 Hb_000318_320--Hb_002107_080 Hb_000318_320--Hb_000984_120 Hb_007007_110 Hb_007007_110 Hb_000318_320--Hb_007007_110 Hb_000318_320--Hb_011609_060 Hb_011609_060--Hb_092044_010 Hb_011609_060--Hb_000984_120 Hb_005040_010 Hb_005040_010 Hb_011609_060--Hb_005040_010 Hb_165552_020 Hb_165552_020 Hb_011609_060--Hb_165552_020 Hb_011609_060--Hb_170979_010 Hb_012753_100 Hb_012753_100 Hb_011609_060--Hb_012753_100 Hb_092044_010--Hb_170979_010 Hb_092044_010--Hb_000984_120 Hb_010028_010 Hb_010028_010 Hb_092044_010--Hb_010028_010 Hb_007235_040 Hb_007235_040 Hb_092044_010--Hb_007235_040 Hb_000206_280 Hb_000206_280 Hb_092044_010--Hb_000206_280 Hb_009393_010 Hb_009393_010 Hb_170979_010--Hb_009393_010 Hb_170979_010--Hb_000984_120 Hb_023502_010 Hb_023502_010 Hb_170979_010--Hb_023502_010 Hb_170979_010--Hb_000206_280 Hb_000417_230 Hb_000417_230 Hb_002107_080--Hb_000417_230 Hb_094839_010 Hb_094839_010 Hb_002107_080--Hb_094839_010 Hb_004968_050 Hb_004968_050 Hb_002107_080--Hb_004968_050 Hb_073973_180 Hb_073973_180 Hb_002107_080--Hb_073973_180 Hb_010573_030 Hb_010573_030 Hb_002107_080--Hb_010573_030 Hb_091826_010 Hb_091826_010 Hb_000984_120--Hb_091826_010 Hb_085910_010 Hb_085910_010 Hb_000984_120--Hb_085910_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0139308 3.40209 0.0961735 1.60169 0.0801043 0.0262101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0468899 0 0

CAGE analysis