Hb_000318_320

Information

Type -
Description -
Location Contig318: 307020-307907
Sequence    

Annotation

kegg
ID rcu:RCOM_0939020
description hypothetical protein
nr
ID XP_012069230.1
description PREDICTED: transmembrane protein 45B [Jatropha curcas]
swissprot
ID Q3T130
description Transmembrane protein 45B OS=Bos taurus GN=TMEM45B PE=2 SV=1
trembl
ID A0A067LMY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10025 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 45b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33543: 307757-308885
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_320 0.0 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
2 Hb_077562_010 0.0998821442 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
3 Hb_002107_080 0.1048736291 - - JHL20J20.3 [Jatropha curcas]
4 Hb_000984_120 0.1056185355 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_007007_110 0.1115059753 - - hypothetical protein JCGZ_14479 [Jatropha curcas]
6 Hb_002078_210 0.1130639192 - - PREDICTED: cytochrome P450 78A5-like [Jatropha curcas]
7 Hb_011609_060 0.1144744848 - - PREDICTED: cytokinin hydroxylase [Jatropha curcas]
8 Hb_092044_010 0.1175404917 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
9 Hb_000072_310 0.1186610592 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
10 Hb_047725_010 0.1214552014 - - ceramidase, putative [Ricinus communis]
11 Hb_002639_090 0.1220912559 - - hypothetical protein JCGZ_08134 [Jatropha curcas]
12 Hb_004607_180 0.1246878599 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000417_230 0.1258517679 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004968_050 0.1268972874 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
15 Hb_170979_010 0.1294088159 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
16 Hb_073973_180 0.132799881 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
17 Hb_094839_010 0.1380911165 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005183_010 0.1392999579 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
19 Hb_000840_230 0.1393603921 - - RING-H2 finger protein ATL1L, putative [Ricinus communis]
20 Hb_010028_010 0.1466553534 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000318_320 Hb_000318_320 Hb_077562_010 Hb_077562_010 Hb_000318_320--Hb_077562_010 Hb_002107_080 Hb_002107_080 Hb_000318_320--Hb_002107_080 Hb_000984_120 Hb_000984_120 Hb_000318_320--Hb_000984_120 Hb_007007_110 Hb_007007_110 Hb_000318_320--Hb_007007_110 Hb_002078_210 Hb_002078_210 Hb_000318_320--Hb_002078_210 Hb_011609_060 Hb_011609_060 Hb_000318_320--Hb_011609_060 Hb_004607_180 Hb_004607_180 Hb_077562_010--Hb_004607_180 Hb_000840_230 Hb_000840_230 Hb_077562_010--Hb_000840_230 Hb_002639_090 Hb_002639_090 Hb_077562_010--Hb_002639_090 Hb_001998_130 Hb_001998_130 Hb_077562_010--Hb_001998_130 Hb_047725_010 Hb_047725_010 Hb_077562_010--Hb_047725_010 Hb_000417_230 Hb_000417_230 Hb_002107_080--Hb_000417_230 Hb_094839_010 Hb_094839_010 Hb_002107_080--Hb_094839_010 Hb_004968_050 Hb_004968_050 Hb_002107_080--Hb_004968_050 Hb_073973_180 Hb_073973_180 Hb_002107_080--Hb_073973_180 Hb_010573_030 Hb_010573_030 Hb_002107_080--Hb_010573_030 Hb_000984_120--Hb_011609_060 Hb_092044_010 Hb_092044_010 Hb_000984_120--Hb_092044_010 Hb_170979_010 Hb_170979_010 Hb_000984_120--Hb_170979_010 Hb_091826_010 Hb_091826_010 Hb_000984_120--Hb_091826_010 Hb_085910_010 Hb_085910_010 Hb_000984_120--Hb_085910_010 Hb_007007_110--Hb_047725_010 Hb_003031_070 Hb_003031_070 Hb_007007_110--Hb_003031_070 Hb_000413_260 Hb_000413_260 Hb_007007_110--Hb_000413_260 Hb_004659_110 Hb_004659_110 Hb_007007_110--Hb_004659_110 Hb_007007_110--Hb_011609_060 Hb_002078_210--Hb_011609_060 Hb_002078_210--Hb_092044_010 Hb_002078_210--Hb_170979_010 Hb_002078_210--Hb_002107_080 Hb_002078_210--Hb_000984_120 Hb_011609_060--Hb_092044_010 Hb_005040_010 Hb_005040_010 Hb_011609_060--Hb_005040_010 Hb_165552_020 Hb_165552_020 Hb_011609_060--Hb_165552_020 Hb_011609_060--Hb_170979_010 Hb_012753_100 Hb_012753_100 Hb_011609_060--Hb_012753_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.334212 96.9755 2.29434 47.8297 0.639 0.907507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.176673 0.0926235 0.0845182 0.709957 1.12638

CAGE analysis