Hb_007007_110

Information

Type -
Description -
Location Contig7007: 65804-69768
Sequence    

Annotation

kegg
ID rcu:RCOM_1613010
description Xylem serine proteinase 1 precursor, putative (EC:1.3.1.74)
nr
ID KDP28708.1
description hypothetical protein JCGZ_14479 [Jatropha curcas]
swissprot
ID Q9LLL8
description Subtilisin-like protease SBT4.14 OS=Arabidopsis thaliana GN=SBT4.14 PE=2 SV=1
trembl
ID A0A067K122
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14479 PE=4 SV=1
Gene Ontology
ID GO:0004252
description xylem serine proteinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54834: 66113-67011 , PASA_asmbl_54835: 67750-68249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007007_110 0.0 - - hypothetical protein JCGZ_14479 [Jatropha curcas]
2 Hb_047725_010 0.0600914552 - - ceramidase, putative [Ricinus communis]
3 Hb_003031_070 0.0871945636 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Jatropha curcas]
4 Hb_000318_320 0.1115059753 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
5 Hb_000413_260 0.1243168415 - - kinase, putative [Ricinus communis]
6 Hb_004659_110 0.1277601574 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
7 Hb_011609_060 0.1326658169 - - PREDICTED: cytokinin hydroxylase [Jatropha curcas]
8 Hb_000417_230 0.1337069783 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005183_010 0.1340370417 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
10 Hb_004968_050 0.1340566079 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
11 Hb_000984_120 0.1371447841 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_009787_020 0.1378446939 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
13 Hb_073973_180 0.1380246666 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
14 Hb_002107_080 0.1392235012 - - JHL20J20.3 [Jatropha curcas]
15 Hb_002025_120 0.1392310067 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
16 Hb_077562_010 0.1404595063 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
17 Hb_005040_010 0.1420865807 - - hypothetical protein RCOM_1110360 [Ricinus communis]
18 Hb_092044_010 0.1510943757 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
19 Hb_006590_030 0.1522777301 - - unknown [Populus trichocarpa]
20 Hb_000983_180 0.15320023 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_007007_110 Hb_007007_110 Hb_047725_010 Hb_047725_010 Hb_007007_110--Hb_047725_010 Hb_003031_070 Hb_003031_070 Hb_007007_110--Hb_003031_070 Hb_000318_320 Hb_000318_320 Hb_007007_110--Hb_000318_320 Hb_000413_260 Hb_000413_260 Hb_007007_110--Hb_000413_260 Hb_004659_110 Hb_004659_110 Hb_007007_110--Hb_004659_110 Hb_011609_060 Hb_011609_060 Hb_007007_110--Hb_011609_060 Hb_047725_010--Hb_003031_070 Hb_047725_010--Hb_000318_320 Hb_009787_020 Hb_009787_020 Hb_047725_010--Hb_009787_020 Hb_077562_010 Hb_077562_010 Hb_047725_010--Hb_077562_010 Hb_047725_010--Hb_004659_110 Hb_003031_070--Hb_009787_020 Hb_007885_120 Hb_007885_120 Hb_003031_070--Hb_007885_120 Hb_003031_070--Hb_004659_110 Hb_002025_120 Hb_002025_120 Hb_003031_070--Hb_002025_120 Hb_000318_320--Hb_077562_010 Hb_002107_080 Hb_002107_080 Hb_000318_320--Hb_002107_080 Hb_000984_120 Hb_000984_120 Hb_000318_320--Hb_000984_120 Hb_002078_210 Hb_002078_210 Hb_000318_320--Hb_002078_210 Hb_000318_320--Hb_011609_060 Hb_000413_260--Hb_047725_010 Hb_073973_180 Hb_073973_180 Hb_000413_260--Hb_073973_180 Hb_000417_230 Hb_000417_230 Hb_000413_260--Hb_000417_230 Hb_000413_260--Hb_002107_080 Hb_000413_260--Hb_004659_110 Hb_004659_110--Hb_002025_120 Hb_012395_260 Hb_012395_260 Hb_004659_110--Hb_012395_260 Hb_004007_190 Hb_004007_190 Hb_004659_110--Hb_004007_190 Hb_004659_110--Hb_009787_020 Hb_010267_030 Hb_010267_030 Hb_004659_110--Hb_010267_030 Hb_000201_070 Hb_000201_070 Hb_004659_110--Hb_000201_070 Hb_092044_010 Hb_092044_010 Hb_011609_060--Hb_092044_010 Hb_011609_060--Hb_000984_120 Hb_005040_010 Hb_005040_010 Hb_011609_060--Hb_005040_010 Hb_165552_020 Hb_165552_020 Hb_011609_060--Hb_165552_020 Hb_170979_010 Hb_170979_010 Hb_011609_060--Hb_170979_010 Hb_012753_100 Hb_012753_100 Hb_011609_060--Hb_012753_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0308518 13.1285 0.3677 8.98025 0.0420897 0.0168708
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.044101 0.638273

CAGE analysis