Hb_000201_070

Information

Type -
Description -
Location Contig201: 109610-112323
Sequence    

Annotation

kegg
ID pop:POPTR_0067s00200g
description hypothetical protein
nr
ID XP_006388952.1
description hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
swissprot
ID C0LGG9
description Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=2 SV=2
trembl
ID U7E2M7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0067s00200g PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable lrr receptor-like serine threonine-protein kinase at1g53430

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20420: 80293-112332 , PASA_asmbl_20421: 90608-110659
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000201_070 0.0 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
2 Hb_010267_030 0.0726766117 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
3 Hb_006951_010 0.0969686514 - - PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Populus euphratica]
4 Hb_112145_010 0.1006498701 - - kinase, putative [Ricinus communis]
5 Hb_155015_020 0.1014290563 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
6 Hb_172240_010 0.1085166572 - - PREDICTED: uncharacterized protein LOC105795660 [Gossypium raimondii]
7 Hb_002186_030 0.1099110322 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430 isoform X1 [Populus euphratica]
8 Hb_012395_260 0.1145063639 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
9 Hb_002811_320 0.1163118151 - - cation-transporting atpase plant, putative [Ricinus communis]
10 Hb_005618_010 0.1204295416 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
11 Hb_000172_070 0.1231124634 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
12 Hb_005643_080 0.1244276158 - - hypothetical protein POPTR_0001s12740g [Populus trichocarpa]
13 Hb_004659_110 0.124853949 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
14 Hb_000230_550 0.1257709362 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic [Jatropha curcas]
15 Hb_000365_190 0.1286912837 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
16 Hb_002170_010 0.130692412 - - hypothetical protein JCGZ_25046 [Jatropha curcas]
17 Hb_001257_120 0.1325312882 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
18 Hb_000181_390 0.1359164658 - - unknown [Lotus japonicus]
19 Hb_005048_090 0.1376923092 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
20 Hb_026048_030 0.1379699761 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000201_070 Hb_000201_070 Hb_010267_030 Hb_010267_030 Hb_000201_070--Hb_010267_030 Hb_006951_010 Hb_006951_010 Hb_000201_070--Hb_006951_010 Hb_112145_010 Hb_112145_010 Hb_000201_070--Hb_112145_010 Hb_155015_020 Hb_155015_020 Hb_000201_070--Hb_155015_020 Hb_172240_010 Hb_172240_010 Hb_000201_070--Hb_172240_010 Hb_002186_030 Hb_002186_030 Hb_000201_070--Hb_002186_030 Hb_005048_090 Hb_005048_090 Hb_010267_030--Hb_005048_090 Hb_000172_070 Hb_000172_070 Hb_010267_030--Hb_000172_070 Hb_005618_010 Hb_005618_010 Hb_010267_030--Hb_005618_010 Hb_002170_010 Hb_002170_010 Hb_010267_030--Hb_002170_010 Hb_010267_030--Hb_112145_010 Hb_006951_010--Hb_002186_030 Hb_006951_010--Hb_112145_010 Hb_004374_170 Hb_004374_170 Hb_006951_010--Hb_004374_170 Hb_002804_070 Hb_002804_070 Hb_006951_010--Hb_002804_070 Hb_006951_010--Hb_002170_010 Hb_112145_010--Hb_002170_010 Hb_128216_010 Hb_128216_010 Hb_112145_010--Hb_128216_010 Hb_002303_050 Hb_002303_050 Hb_112145_010--Hb_002303_050 Hb_112145_010--Hb_155015_020 Hb_002811_320 Hb_002811_320 Hb_112145_010--Hb_002811_320 Hb_155015_020--Hb_002811_320 Hb_001198_170 Hb_001198_170 Hb_155015_020--Hb_001198_170 Hb_001257_120 Hb_001257_120 Hb_155015_020--Hb_001257_120 Hb_155015_020--Hb_172240_010 Hb_098175_010 Hb_098175_010 Hb_172240_010--Hb_098175_010 Hb_172240_010--Hb_001257_120 Hb_003071_040 Hb_003071_040 Hb_172240_010--Hb_003071_040 Hb_172240_010--Hb_002811_320 Hb_002186_030--Hb_004374_170 Hb_005946_200 Hb_005946_200 Hb_002186_030--Hb_005946_200 Hb_001115_100 Hb_001115_100 Hb_002186_030--Hb_001115_100 Hb_002186_030--Hb_002804_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.116194 58.6824 14.3989 59.7451 0.522096 0.250642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0177279 0 0.275062 10.7531

CAGE analysis