Hb_002186_030

Information

Type -
Description -
Location Contig2186: 36931-50198
Sequence    

Annotation

kegg
ID cit:102620852
description probable LRR receptor-like serine/threonine-protein kinase At1g53430-like
nr
ID XP_011040213.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430 isoform X1 [Populus euphratica]
swissprot
ID C0LGG7
description Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2
trembl
ID B9IFQ7
description Putative receptor-like protein kinase RLPK1 (Fragment) OS=Populus trichocarpa GN=POPTR_0016s09580g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22527: 37218-37460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002186_030 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430 isoform X1 [Populus euphratica]
2 Hb_006951_010 0.0886315675 - - PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Populus euphratica]
3 Hb_000201_070 0.1099110322 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
4 Hb_004374_170 0.109919344 - - PREDICTED: gibberellin 20 oxidase 1-B [Jatropha curcas]
5 Hb_005946_200 0.1122600807 - - hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
6 Hb_001115_100 0.1133482529 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
7 Hb_002804_070 0.1163785955 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
8 Hb_002811_320 0.1221596163 - - cation-transporting atpase plant, putative [Ricinus communis]
9 Hb_155015_020 0.1269238148 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
10 Hb_001221_050 0.1276928632 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
11 Hb_112145_010 0.1303552099 - - kinase, putative [Ricinus communis]
12 Hb_002303_050 0.1315776269 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor PTL-like [Populus euphratica]
13 Hb_001518_030 0.1370642846 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
14 Hb_006153_020 0.1411532886 - - vacuolar invertase [Manihot esculenta]
15 Hb_017549_010 0.1414556416 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
16 Hb_001953_010 0.1421938997 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
17 Hb_005643_080 0.1445684693 - - hypothetical protein POPTR_0001s12740g [Populus trichocarpa]
18 Hb_026048_030 0.145125726 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001257_120 0.1466533212 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
20 Hb_010267_030 0.1480310198 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002186_030 Hb_002186_030 Hb_006951_010 Hb_006951_010 Hb_002186_030--Hb_006951_010 Hb_000201_070 Hb_000201_070 Hb_002186_030--Hb_000201_070 Hb_004374_170 Hb_004374_170 Hb_002186_030--Hb_004374_170 Hb_005946_200 Hb_005946_200 Hb_002186_030--Hb_005946_200 Hb_001115_100 Hb_001115_100 Hb_002186_030--Hb_001115_100 Hb_002804_070 Hb_002804_070 Hb_002186_030--Hb_002804_070 Hb_112145_010 Hb_112145_010 Hb_006951_010--Hb_112145_010 Hb_006951_010--Hb_000201_070 Hb_006951_010--Hb_004374_170 Hb_006951_010--Hb_002804_070 Hb_002170_010 Hb_002170_010 Hb_006951_010--Hb_002170_010 Hb_010267_030 Hb_010267_030 Hb_000201_070--Hb_010267_030 Hb_000201_070--Hb_112145_010 Hb_155015_020 Hb_155015_020 Hb_000201_070--Hb_155015_020 Hb_172240_010 Hb_172240_010 Hb_000201_070--Hb_172240_010 Hb_004374_170--Hb_002804_070 Hb_001953_010 Hb_001953_010 Hb_004374_170--Hb_001953_010 Hb_000120_600 Hb_000120_600 Hb_004374_170--Hb_000120_600 Hb_017549_010 Hb_017549_010 Hb_004374_170--Hb_017549_010 Hb_004374_170--Hb_005946_200 Hb_001221_050 Hb_001221_050 Hb_005946_200--Hb_001221_050 Hb_002303_050 Hb_002303_050 Hb_005946_200--Hb_002303_050 Hb_005946_200--Hb_002804_070 Hb_006153_020 Hb_006153_020 Hb_005946_200--Hb_006153_020 Hb_001022_070 Hb_001022_070 Hb_005946_200--Hb_001022_070 Hb_002811_320 Hb_002811_320 Hb_005946_200--Hb_002811_320 Hb_001115_100--Hb_017549_010 Hb_003209_120 Hb_003209_120 Hb_001115_100--Hb_003209_120 Hb_001115_100--Hb_004374_170 Hb_001115_100--Hb_001221_050 Hb_001675_350 Hb_001675_350 Hb_001115_100--Hb_001675_350 Hb_002804_070--Hb_001953_010 Hb_002804_070--Hb_000120_600 Hb_002804_070--Hb_002303_050 Hb_004474_070 Hb_004474_070 Hb_002804_070--Hb_004474_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.58076 0.759904 2.0309 0.0625575 0.028967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0176341 0.282673

CAGE analysis