Hb_172240_010

Information

Type -
Description -
Location Contig172240: 1560-7380
Sequence    

Annotation

kegg
ID pxb:103931166
description uncharacterized LOC103931166
nr
ID XP_012480794.1
description PREDICTED: uncharacterized protein LOC105795660 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A5BDH9
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16245: 2675-7176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172240_010 0.0 - - PREDICTED: uncharacterized protein LOC105795660 [Gossypium raimondii]
2 Hb_098175_010 0.0719535583 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
3 Hb_001257_120 0.0820578899 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
4 Hb_155015_020 0.1004024771 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
5 Hb_003071_040 0.1078044415 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
6 Hb_000201_070 0.1085166572 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
7 Hb_002811_320 0.1123416448 - - cation-transporting atpase plant, putative [Ricinus communis]
8 Hb_001198_170 0.1168111528 - - -
9 Hb_004659_110 0.1250151793 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
10 Hb_000358_170 0.1303149031 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
11 Hb_002025_120 0.1357797573 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
12 Hb_001098_020 0.138962427 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
13 Hb_010369_010 0.1394799507 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011429_010 0.1407458144 - - hypothetical protein POPTR_0188s00230g [Populus trichocarpa]
15 Hb_012395_260 0.1408372184 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
16 Hb_001213_140 0.1413790003 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
17 Hb_000769_030 0.141804334 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_000777_020 0.1485116747 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
19 Hb_000008_170 0.150344862 - - PREDICTED: uncharacterized protein LOC105628076 [Jatropha curcas]
20 Hb_004241_100 0.1503506642 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_172240_010 Hb_172240_010 Hb_098175_010 Hb_098175_010 Hb_172240_010--Hb_098175_010 Hb_001257_120 Hb_001257_120 Hb_172240_010--Hb_001257_120 Hb_155015_020 Hb_155015_020 Hb_172240_010--Hb_155015_020 Hb_003071_040 Hb_003071_040 Hb_172240_010--Hb_003071_040 Hb_000201_070 Hb_000201_070 Hb_172240_010--Hb_000201_070 Hb_002811_320 Hb_002811_320 Hb_172240_010--Hb_002811_320 Hb_098175_010--Hb_003071_040 Hb_011429_010 Hb_011429_010 Hb_098175_010--Hb_011429_010 Hb_000769_030 Hb_000769_030 Hb_098175_010--Hb_000769_030 Hb_010573_030 Hb_010573_030 Hb_098175_010--Hb_010573_030 Hb_003602_080 Hb_003602_080 Hb_098175_010--Hb_003602_080 Hb_001198_170 Hb_001198_170 Hb_001257_120--Hb_001198_170 Hb_000358_170 Hb_000358_170 Hb_001257_120--Hb_000358_170 Hb_001257_120--Hb_002811_320 Hb_001257_120--Hb_155015_020 Hb_001257_120--Hb_098175_010 Hb_155015_020--Hb_002811_320 Hb_155015_020--Hb_001198_170 Hb_112145_010 Hb_112145_010 Hb_155015_020--Hb_112145_010 Hb_155015_020--Hb_000201_070 Hb_001098_020 Hb_001098_020 Hb_003071_040--Hb_001098_020 Hb_000313_190 Hb_000313_190 Hb_003071_040--Hb_000313_190 Hb_000731_020 Hb_000731_020 Hb_003071_040--Hb_000731_020 Hb_003071_040--Hb_010573_030 Hb_000529_050 Hb_000529_050 Hb_003071_040--Hb_000529_050 Hb_010267_030 Hb_010267_030 Hb_000201_070--Hb_010267_030 Hb_006951_010 Hb_006951_010 Hb_000201_070--Hb_006951_010 Hb_000201_070--Hb_112145_010 Hb_002186_030 Hb_002186_030 Hb_000201_070--Hb_002186_030 Hb_002811_320--Hb_001198_170 Hb_005946_200 Hb_005946_200 Hb_002811_320--Hb_005946_200 Hb_002811_320--Hb_112145_010 Hb_004241_100 Hb_004241_100 Hb_002811_320--Hb_004241_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.218831 0.0532622 0.175825 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0165754

CAGE analysis