Hb_003602_080

Information

Type -
Description -
Location Contig3602: 67295-68445
Sequence    

Annotation

kegg
ID pop:POPTR_0002s10890g
description hypothetical protein
nr
ID XP_006386442.1
description hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
swissprot
ID Q9LSK9
description Uncharacterized protein At5g65660 OS=Arabidopsis thaliana GN=At5g65660 PE=2 SV=1
trembl
ID U5GPZ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s10890g PE=4 SV=1
Gene Ontology
ID GO:0005886
description hydroxyproline-rich glycoprotein family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003602_080 0.0 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
2 Hb_010012_020 0.0879815361 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011429_010 0.0917144371 - - hypothetical protein POPTR_0188s00230g [Populus trichocarpa]
4 Hb_000769_030 0.1011572135 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_039410_010 0.103633512 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
6 Hb_165552_020 0.1039953248 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_098175_010 0.1074713247 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
8 Hb_010573_030 0.1092499995 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003674_010 0.1163949232 - - purine transporter, putative [Ricinus communis]
10 Hb_009697_010 0.11740508 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000203_090 0.1195121039 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
12 Hb_004458_010 0.1195523455 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
13 Hb_002422_020 0.1209233258 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
14 Hb_002420_030 0.1267783357 - - Disease resistance protein RPS5, putative [Ricinus communis]
15 Hb_013591_010 0.1271644621 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
16 Hb_007728_010 0.1327299649 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
17 Hb_004724_290 0.1335423715 transcription factor TF Family: NAC -
18 Hb_137612_010 0.1429543384 - - cytochrome P450, putative [Ricinus communis]
19 Hb_010369_010 0.1441240277 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005040_010 0.1477590094 - - hypothetical protein RCOM_1110360 [Ricinus communis]

Gene co-expression network

sample Hb_003602_080 Hb_003602_080 Hb_010012_020 Hb_010012_020 Hb_003602_080--Hb_010012_020 Hb_011429_010 Hb_011429_010 Hb_003602_080--Hb_011429_010 Hb_000769_030 Hb_000769_030 Hb_003602_080--Hb_000769_030 Hb_039410_010 Hb_039410_010 Hb_003602_080--Hb_039410_010 Hb_165552_020 Hb_165552_020 Hb_003602_080--Hb_165552_020 Hb_098175_010 Hb_098175_010 Hb_003602_080--Hb_098175_010 Hb_003674_010 Hb_003674_010 Hb_010012_020--Hb_003674_010 Hb_002420_030 Hb_002420_030 Hb_010012_020--Hb_002420_030 Hb_010573_030 Hb_010573_030 Hb_010012_020--Hb_010573_030 Hb_010012_020--Hb_165552_020 Hb_010012_020--Hb_011429_010 Hb_011429_010--Hb_000769_030 Hb_004724_290 Hb_004724_290 Hb_011429_010--Hb_004724_290 Hb_011429_010--Hb_098175_010 Hb_128460_020 Hb_128460_020 Hb_011429_010--Hb_128460_020 Hb_010369_010 Hb_010369_010 Hb_011429_010--Hb_010369_010 Hb_000769_030--Hb_128460_020 Hb_014361_140 Hb_014361_140 Hb_000769_030--Hb_014361_140 Hb_053935_010 Hb_053935_010 Hb_000769_030--Hb_053935_010 Hb_000769_030--Hb_010369_010 Hb_000769_030--Hb_004724_290 Hb_000203_090 Hb_000203_090 Hb_039410_010--Hb_000203_090 Hb_000167_090 Hb_000167_090 Hb_039410_010--Hb_000167_090 Hb_039410_010--Hb_165552_020 Hb_005040_010 Hb_005040_010 Hb_039410_010--Hb_005040_010 Hb_001957_050 Hb_001957_050 Hb_039410_010--Hb_001957_050 Hb_165552_020--Hb_005040_010 Hb_165552_020--Hb_002420_030 Hb_007728_010 Hb_007728_010 Hb_165552_020--Hb_007728_010 Hb_165552_020--Hb_010573_030 Hb_011609_060 Hb_011609_060 Hb_165552_020--Hb_011609_060 Hb_172240_010 Hb_172240_010 Hb_098175_010--Hb_172240_010 Hb_003071_040 Hb_003071_040 Hb_098175_010--Hb_003071_040 Hb_098175_010--Hb_000769_030 Hb_098175_010--Hb_010573_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.22793 0.819455 3.06386 0 0.0781221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis