Hb_002420_030

Information

Type -
Description -
Location Contig2420: 38535-38876
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_002522629.1
description Disease resistance protein RPS5, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25330: 38689-38863
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002420_030 0.0 - - Disease resistance protein RPS5, putative [Ricinus communis]
2 Hb_165552_020 0.0765483948 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
3 Hb_010012_020 0.0906566909 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005040_010 0.0962133838 - - hypothetical protein RCOM_1110360 [Ricinus communis]
5 Hb_001957_050 0.1047179977 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_003674_010 0.1107928957 - - purine transporter, putative [Ricinus communis]
7 Hb_039410_010 0.1110532077 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
8 Hb_043115_010 0.1165428252 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
9 Hb_009620_010 0.1188003098 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
10 Hb_011609_060 0.1225620583 - - PREDICTED: cytokinin hydroxylase [Jatropha curcas]
11 Hb_003602_080 0.1267783357 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
12 Hb_010573_030 0.1277570959 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007728_010 0.1297790332 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
14 Hb_006590_030 0.1307785843 - - unknown [Populus trichocarpa]
15 Hb_009697_010 0.1317696208 - - conserved hypothetical protein [Ricinus communis]
16 Hb_092044_010 0.1400992894 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
17 Hb_004458_010 0.1415123706 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
18 Hb_002107_080 0.1433540539 - - JHL20J20.3 [Jatropha curcas]
19 Hb_098175_010 0.1475720658 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
20 Hb_002078_210 0.1479016575 - - PREDICTED: cytochrome P450 78A5-like [Jatropha curcas]

Gene co-expression network

sample Hb_002420_030 Hb_002420_030 Hb_165552_020 Hb_165552_020 Hb_002420_030--Hb_165552_020 Hb_010012_020 Hb_010012_020 Hb_002420_030--Hb_010012_020 Hb_005040_010 Hb_005040_010 Hb_002420_030--Hb_005040_010 Hb_001957_050 Hb_001957_050 Hb_002420_030--Hb_001957_050 Hb_003674_010 Hb_003674_010 Hb_002420_030--Hb_003674_010 Hb_039410_010 Hb_039410_010 Hb_002420_030--Hb_039410_010 Hb_165552_020--Hb_005040_010 Hb_007728_010 Hb_007728_010 Hb_165552_020--Hb_007728_010 Hb_010573_030 Hb_010573_030 Hb_165552_020--Hb_010573_030 Hb_011609_060 Hb_011609_060 Hb_165552_020--Hb_011609_060 Hb_165552_020--Hb_010012_020 Hb_010012_020--Hb_003674_010 Hb_003602_080 Hb_003602_080 Hb_010012_020--Hb_003602_080 Hb_010012_020--Hb_010573_030 Hb_011429_010 Hb_011429_010 Hb_010012_020--Hb_011429_010 Hb_006590_030 Hb_006590_030 Hb_005040_010--Hb_006590_030 Hb_005040_010--Hb_011609_060 Hb_005040_010--Hb_001957_050 Hb_005040_010--Hb_039410_010 Hb_002869_040 Hb_002869_040 Hb_001957_050--Hb_002869_040 Hb_001957_050--Hb_006590_030 Hb_000167_090 Hb_000167_090 Hb_001957_050--Hb_000167_090 Hb_001957_050--Hb_039410_010 Hb_002422_020 Hb_002422_020 Hb_003674_010--Hb_002422_020 Hb_013591_010 Hb_013591_010 Hb_003674_010--Hb_013591_010 Hb_003674_010--Hb_011429_010 Hb_003674_010--Hb_010573_030 Hb_000203_090 Hb_000203_090 Hb_039410_010--Hb_000203_090 Hb_039410_010--Hb_000167_090 Hb_039410_010--Hb_165552_020 Hb_039410_010--Hb_003602_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.86636 0.565496 4.2213 0.11723 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis