Hb_006590_030

Information

Type -
Description -
Location Contig6590: 39199-40095
Sequence    

Annotation

kegg
ID pop:POPTR_0013s10410g
description hypothetical protein
nr
ID ABK95950.1
description unknown [Populus trichocarpa]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID A9PHU7
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0008233
description metalloendoproteinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006590_030 0.0 - - unknown [Populus trichocarpa]
2 Hb_005040_010 0.0477199364 - - hypothetical protein RCOM_1110360 [Ricinus communis]
3 Hb_000953_160 0.0944393849 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
4 Hb_003910_030 0.0944402833 - - PREDICTED: probable disease resistance protein At5g66910 [Populus euphratica]
5 Hb_061641_010 0.0944512803 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
6 Hb_004077_010 0.0945301616 - - retinoblastoma-binding protein, putative [Ricinus communis]
7 Hb_169511_020 0.094557307 - - PREDICTED: uncharacterized protein LOC105037523, partial [Elaeis guineensis]
8 Hb_103659_010 0.0945718333 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001957_050 0.0952166022 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
10 Hb_001975_060 0.09524319 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
11 Hb_003453_070 0.0973898697 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
12 Hb_078439_010 0.0982259171 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
13 Hb_005839_070 0.0984983806 - - hypothetical protein POPTR_0013s08160g [Populus trichocarpa]
14 Hb_010374_010 0.0986378649 - - TMV resistance protein N, putative [Ricinus communis]
15 Hb_020301_050 0.0991463775 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004668_030 0.0993081967 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
17 Hb_000983_180 0.0999475685 - - cytochrome P450, putative [Ricinus communis]
18 Hb_000770_020 0.1010436541 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
19 Hb_011045_020 0.1014463835 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
20 Hb_000120_100 0.1015612198 - - -

Gene co-expression network

sample Hb_006590_030 Hb_006590_030 Hb_005040_010 Hb_005040_010 Hb_006590_030--Hb_005040_010 Hb_000953_160 Hb_000953_160 Hb_006590_030--Hb_000953_160 Hb_003910_030 Hb_003910_030 Hb_006590_030--Hb_003910_030 Hb_061641_010 Hb_061641_010 Hb_006590_030--Hb_061641_010 Hb_004077_010 Hb_004077_010 Hb_006590_030--Hb_004077_010 Hb_169511_020 Hb_169511_020 Hb_006590_030--Hb_169511_020 Hb_165552_020 Hb_165552_020 Hb_005040_010--Hb_165552_020 Hb_011609_060 Hb_011609_060 Hb_005040_010--Hb_011609_060 Hb_001957_050 Hb_001957_050 Hb_005040_010--Hb_001957_050 Hb_002420_030 Hb_002420_030 Hb_005040_010--Hb_002420_030 Hb_039410_010 Hb_039410_010 Hb_005040_010--Hb_039410_010 Hb_000953_160--Hb_003910_030 Hb_000953_160--Hb_061641_010 Hb_000953_160--Hb_004077_010 Hb_000953_160--Hb_169511_020 Hb_103659_010 Hb_103659_010 Hb_000953_160--Hb_103659_010 Hb_001975_060 Hb_001975_060 Hb_000953_160--Hb_001975_060 Hb_003910_030--Hb_061641_010 Hb_003910_030--Hb_169511_020 Hb_003910_030--Hb_004077_010 Hb_003910_030--Hb_103659_010 Hb_003910_030--Hb_001975_060 Hb_061641_010--Hb_004077_010 Hb_061641_010--Hb_103659_010 Hb_061641_010--Hb_169511_020 Hb_061641_010--Hb_001975_060 Hb_004077_010--Hb_103659_010 Hb_004077_010--Hb_001975_060 Hb_004077_010--Hb_169511_020 Hb_169511_020--Hb_103659_010 Hb_169511_020--Hb_001975_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.5257 0.0190168 0.528267 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis