Hb_039410_010

Information

Type -
Description -
Location Contig39410: 103-597
Sequence    

Annotation

kegg
ID vvi:100249725
description glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like
nr
ID KDP42829.1
description hypothetical protein JCGZ_23771 [Jatropha curcas]
swissprot
ID Q3ECH2
description Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2
trembl
ID A0A067LFF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23771 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor serine threonine

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039410_010 0.0 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
2 Hb_000203_090 0.0561685095 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
3 Hb_000167_090 0.0631350124 - - conserved hypothetical protein [Ricinus communis]
4 Hb_165552_020 0.0996650982 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
5 Hb_005040_010 0.1002218743 - - hypothetical protein RCOM_1110360 [Ricinus communis]
6 Hb_001957_050 0.1034816651 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
7 Hb_003602_080 0.103633512 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
8 Hb_002548_010 0.1042976907 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
9 Hb_002422_010 0.1097697834 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
10 Hb_009697_010 0.1106749068 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002420_030 0.1110532077 - - Disease resistance protein RPS5, putative [Ricinus communis]
12 Hb_000769_030 0.1119940358 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_011429_010 0.1174879771 - - hypothetical protein POPTR_0188s00230g [Populus trichocarpa]
14 Hb_010012_020 0.1189975205 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006590_030 0.1240029091 - - unknown [Populus trichocarpa]
16 Hb_098175_010 0.124183122 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
17 Hb_004458_010 0.1274702579 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
18 Hb_043115_010 0.1343311549 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
19 Hb_182625_010 0.1345311033 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
20 Hb_009620_010 0.1379022609 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_039410_010 Hb_039410_010 Hb_000203_090 Hb_000203_090 Hb_039410_010--Hb_000203_090 Hb_000167_090 Hb_000167_090 Hb_039410_010--Hb_000167_090 Hb_165552_020 Hb_165552_020 Hb_039410_010--Hb_165552_020 Hb_005040_010 Hb_005040_010 Hb_039410_010--Hb_005040_010 Hb_001957_050 Hb_001957_050 Hb_039410_010--Hb_001957_050 Hb_003602_080 Hb_003602_080 Hb_039410_010--Hb_003602_080 Hb_000203_090--Hb_000167_090 Hb_182625_010 Hb_182625_010 Hb_000203_090--Hb_182625_010 Hb_000769_030 Hb_000769_030 Hb_000203_090--Hb_000769_030 Hb_002548_010 Hb_002548_010 Hb_000203_090--Hb_002548_010 Hb_014361_140 Hb_014361_140 Hb_000203_090--Hb_014361_140 Hb_000167_090--Hb_002548_010 Hb_002422_010 Hb_002422_010 Hb_000167_090--Hb_002422_010 Hb_001104_250 Hb_001104_250 Hb_000167_090--Hb_001104_250 Hb_000769_050 Hb_000769_050 Hb_000167_090--Hb_000769_050 Hb_165552_020--Hb_005040_010 Hb_002420_030 Hb_002420_030 Hb_165552_020--Hb_002420_030 Hb_007728_010 Hb_007728_010 Hb_165552_020--Hb_007728_010 Hb_010573_030 Hb_010573_030 Hb_165552_020--Hb_010573_030 Hb_011609_060 Hb_011609_060 Hb_165552_020--Hb_011609_060 Hb_010012_020 Hb_010012_020 Hb_165552_020--Hb_010012_020 Hb_006590_030 Hb_006590_030 Hb_005040_010--Hb_006590_030 Hb_005040_010--Hb_011609_060 Hb_005040_010--Hb_001957_050 Hb_005040_010--Hb_002420_030 Hb_002869_040 Hb_002869_040 Hb_001957_050--Hb_002869_040 Hb_001957_050--Hb_006590_030 Hb_001957_050--Hb_000167_090 Hb_001957_050--Hb_002420_030 Hb_003602_080--Hb_010012_020 Hb_011429_010 Hb_011429_010 Hb_003602_080--Hb_011429_010 Hb_003602_080--Hb_000769_030 Hb_003602_080--Hb_165552_020 Hb_098175_010 Hb_098175_010 Hb_003602_080--Hb_098175_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.281373 0.0479252 0.287258 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis