Hb_002548_010

Information

Type -
Description -
Location Contig2548: 2301-6576
Sequence    

Annotation

kegg
ID rcu:RCOM_0574900
description receptor serine/threonine kinase, putative
nr
ID KCW45694.1
description hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
swissprot
ID P0DH62
description Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii GN=SELMODRAFT_444075 PE=2 SV=1
trembl
ID A0A058ZW60
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L00530 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002548_010 0.0 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
2 Hb_000167_090 0.0450517747 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001104_250 0.0564393174 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
4 Hb_000769_050 0.0668054872 - - hypothetical protein CISIN_1g030637mg [Citrus sinensis]
5 Hb_000203_090 0.0929501083 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
6 Hb_000152_090 0.0931164406 - - unnamed protein product [Coffea canephora]
7 Hb_182625_010 0.1037320263 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
8 Hb_039410_010 0.1042976907 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
9 Hb_123887_010 0.1150750769 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
10 Hb_002422_010 0.1181830076 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
11 Hb_001414_120 0.1216071954 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
12 Hb_003839_060 0.1232143027 - - PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]
13 Hb_003442_020 0.123475034 - - ccd1, putative [Ricinus communis]
14 Hb_001948_100 0.1287621714 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001957_050 0.1299692368 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
16 Hb_002869_040 0.131071761 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
17 Hb_003012_010 0.1322097458 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000021_010 0.1332888203 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011671_360 0.1355991225 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]
20 Hb_003529_010 0.1361535108 - - PREDICTED: disease resistance protein RPS6-like [Jatropha curcas]

Gene co-expression network

sample Hb_002548_010 Hb_002548_010 Hb_000167_090 Hb_000167_090 Hb_002548_010--Hb_000167_090 Hb_001104_250 Hb_001104_250 Hb_002548_010--Hb_001104_250 Hb_000769_050 Hb_000769_050 Hb_002548_010--Hb_000769_050 Hb_000203_090 Hb_000203_090 Hb_002548_010--Hb_000203_090 Hb_000152_090 Hb_000152_090 Hb_002548_010--Hb_000152_090 Hb_182625_010 Hb_182625_010 Hb_002548_010--Hb_182625_010 Hb_039410_010 Hb_039410_010 Hb_000167_090--Hb_039410_010 Hb_000167_090--Hb_000203_090 Hb_002422_010 Hb_002422_010 Hb_000167_090--Hb_002422_010 Hb_000167_090--Hb_001104_250 Hb_000167_090--Hb_000769_050 Hb_001104_250--Hb_000769_050 Hb_003839_060 Hb_003839_060 Hb_001104_250--Hb_003839_060 Hb_003442_020 Hb_003442_020 Hb_001104_250--Hb_003442_020 Hb_123887_010 Hb_123887_010 Hb_001104_250--Hb_123887_010 Hb_001104_250--Hb_000152_090 Hb_000769_050--Hb_123887_010 Hb_000769_050--Hb_000152_090 Hb_000769_050--Hb_003442_020 Hb_000203_090--Hb_039410_010 Hb_000203_090--Hb_182625_010 Hb_000769_030 Hb_000769_030 Hb_000203_090--Hb_000769_030 Hb_014361_140 Hb_014361_140 Hb_000203_090--Hb_014361_140 Hb_001948_100 Hb_001948_100 Hb_000152_090--Hb_001948_100 Hb_009838_030 Hb_009838_030 Hb_000152_090--Hb_009838_030 Hb_003073_060 Hb_003073_060 Hb_000152_090--Hb_003073_060 Hb_003337_010 Hb_003337_010 Hb_000152_090--Hb_003337_010 Hb_002014_120 Hb_002014_120 Hb_000152_090--Hb_002014_120 Hb_011671_360 Hb_011671_360 Hb_182625_010--Hb_011671_360 Hb_104855_010 Hb_104855_010 Hb_182625_010--Hb_104855_010 Hb_182625_010--Hb_014361_140 Hb_182625_010--Hb_003073_060 Hb_182625_010--Hb_000152_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.122489 0.026312 0.209671 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis