Hb_000152_090

Information

Type -
Description -
Location Contig152: 53059-54207
Sequence    

Annotation

kegg
ID pmum:103333289
description exostosin-like 2
nr
ID CDP05275.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q9LY62
description Glycosyltransferase family 64 protein C4 OS=Arabidopsis thaliana GN=EPC1 PE=2 SV=1
trembl
ID A0A068U9Q4
description Coffea canephora DH200=94 genomic scaffold, scaffold_15 OS=Coffea canephora GN=GSCOC_T00020262001 PE=4 SV=1
Gene Ontology
ID GO:0016740
description glycosyltransferase family 64 protein c4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_090 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_001948_100 0.0374762684 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009838_030 0.0681426748 - - Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
4 Hb_003073_060 0.0686924102 - - -
5 Hb_003337_010 0.0691588992 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002014_120 0.0782781992 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
7 Hb_001104_250 0.079075818 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
8 Hb_004652_040 0.0814242767 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_103000_010 0.0854442146 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
10 Hb_000352_020 0.0874029583 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
11 Hb_003442_020 0.087746672 - - ccd1, putative [Ricinus communis]
12 Hb_182625_010 0.0918494987 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
13 Hb_002548_010 0.0931164406 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
14 Hb_000769_050 0.0936031676 - - hypothetical protein CISIN_1g030637mg [Citrus sinensis]
15 Hb_005428_010 0.0950990763 - - cytochrome P450, putative [Ricinus communis]
16 Hb_011671_360 0.0974044002 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]
17 Hb_007125_020 0.1006826711 - - hypothetical protein POPTR_0003s18010g [Populus trichocarpa]
18 Hb_179367_010 0.1020618459 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
19 Hb_123887_010 0.1058888404 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
20 Hb_010261_050 0.1126262634 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000152_090 Hb_000152_090 Hb_001948_100 Hb_001948_100 Hb_000152_090--Hb_001948_100 Hb_009838_030 Hb_009838_030 Hb_000152_090--Hb_009838_030 Hb_003073_060 Hb_003073_060 Hb_000152_090--Hb_003073_060 Hb_003337_010 Hb_003337_010 Hb_000152_090--Hb_003337_010 Hb_002014_120 Hb_002014_120 Hb_000152_090--Hb_002014_120 Hb_001104_250 Hb_001104_250 Hb_000152_090--Hb_001104_250 Hb_001948_100--Hb_009838_030 Hb_001948_100--Hb_003337_010 Hb_001948_100--Hb_002014_120 Hb_004652_040 Hb_004652_040 Hb_001948_100--Hb_004652_040 Hb_103000_010 Hb_103000_010 Hb_001948_100--Hb_103000_010 Hb_000352_020 Hb_000352_020 Hb_009838_030--Hb_000352_020 Hb_009838_030--Hb_002014_120 Hb_009838_030--Hb_004652_040 Hb_179367_010 Hb_179367_010 Hb_009838_030--Hb_179367_010 Hb_009838_030--Hb_003337_010 Hb_005428_010 Hb_005428_010 Hb_003073_060--Hb_005428_010 Hb_003073_060--Hb_000352_020 Hb_003073_060--Hb_009838_030 Hb_003073_060--Hb_001948_100 Hb_011671_360 Hb_011671_360 Hb_003073_060--Hb_011671_360 Hb_003337_010--Hb_103000_010 Hb_003337_010--Hb_004652_040 Hb_003337_010--Hb_002014_120 Hb_003337_010--Hb_179367_010 Hb_002014_120--Hb_004652_040 Hb_002014_120--Hb_103000_010 Hb_002014_120--Hb_179367_010 Hb_002548_010 Hb_002548_010 Hb_001104_250--Hb_002548_010 Hb_000769_050 Hb_000769_050 Hb_001104_250--Hb_000769_050 Hb_003839_060 Hb_003839_060 Hb_001104_250--Hb_003839_060 Hb_003442_020 Hb_003442_020 Hb_001104_250--Hb_003442_020 Hb_123887_010 Hb_123887_010 Hb_001104_250--Hb_123887_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.177708 0.0795408 0.447573 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis