Hb_009838_030

Information

Type -
Description -
Location Contig9838: 10931-11939
Sequence    

Annotation

kegg
ID tcc:TCM_020990
description Tetratricopeptide repeat-like superfamily protein
nr
ID XP_007035253.1
description Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
swissprot
ID Q9SHZ8
description Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
trembl
ID A0A061EVB1
description Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao GN=TCM_020990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009838_030 0.0 - - Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
2 Hb_000352_020 0.024691388 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
3 Hb_002014_120 0.0286546391 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
4 Hb_001948_100 0.0337464424 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004652_040 0.0387308051 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_179367_010 0.0449652844 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
7 Hb_003337_010 0.0495791463 - - conserved hypothetical protein [Ricinus communis]
8 Hb_103000_010 0.0514891767 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
9 Hb_003073_060 0.0562018427 - - -
10 Hb_104362_020 0.0617544964 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
11 Hb_005428_010 0.0635278078 - - cytochrome P450, putative [Ricinus communis]
12 Hb_000152_090 0.0681426748 - - unnamed protein product [Coffea canephora]
13 Hb_000174_130 0.0763372391 - - flowering locus T-like protein [Fagus crenata]
14 Hb_151027_010 0.085954023 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
15 Hb_007125_020 0.0875835707 - - hypothetical protein POPTR_0003s18010g [Populus trichocarpa]
16 Hb_166700_010 0.0921072369 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
17 Hb_010261_050 0.1055905253 - - DNA binding protein, putative [Ricinus communis]
18 Hb_003442_020 0.1103660426 - - ccd1, putative [Ricinus communis]
19 Hb_001006_080 0.1161012416 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
20 Hb_008196_010 0.1172425109 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_009838_030 Hb_009838_030 Hb_000352_020 Hb_000352_020 Hb_009838_030--Hb_000352_020 Hb_002014_120 Hb_002014_120 Hb_009838_030--Hb_002014_120 Hb_001948_100 Hb_001948_100 Hb_009838_030--Hb_001948_100 Hb_004652_040 Hb_004652_040 Hb_009838_030--Hb_004652_040 Hb_179367_010 Hb_179367_010 Hb_009838_030--Hb_179367_010 Hb_003337_010 Hb_003337_010 Hb_009838_030--Hb_003337_010 Hb_000352_020--Hb_002014_120 Hb_005428_010 Hb_005428_010 Hb_000352_020--Hb_005428_010 Hb_003073_060 Hb_003073_060 Hb_000352_020--Hb_003073_060 Hb_000352_020--Hb_179367_010 Hb_000352_020--Hb_001948_100 Hb_002014_120--Hb_004652_040 Hb_103000_010 Hb_103000_010 Hb_002014_120--Hb_103000_010 Hb_002014_120--Hb_179367_010 Hb_002014_120--Hb_003337_010 Hb_002014_120--Hb_001948_100 Hb_000152_090 Hb_000152_090 Hb_001948_100--Hb_000152_090 Hb_001948_100--Hb_003337_010 Hb_001948_100--Hb_004652_040 Hb_001948_100--Hb_103000_010 Hb_004652_040--Hb_103000_010 Hb_004652_040--Hb_003337_010 Hb_004652_040--Hb_179367_010 Hb_000174_130 Hb_000174_130 Hb_004652_040--Hb_000174_130 Hb_104362_020 Hb_104362_020 Hb_179367_010--Hb_104362_020 Hb_179367_010--Hb_103000_010 Hb_179367_010--Hb_000174_130 Hb_151027_010 Hb_151027_010 Hb_179367_010--Hb_151027_010 Hb_003337_010--Hb_103000_010 Hb_003337_010--Hb_179367_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0247023 0.0184356 0.0867889 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis