Hb_001948_100

Information

Type -
Description -
Location Contig1948: 97597-98413
Sequence    

Annotation

kegg
ID rcu:RCOM_0307650
description hypothetical protein
nr
ID XP_002534031.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T712
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0307650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19444: 98199-98605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001948_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009838_030 0.0337464424 - - Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
3 Hb_000152_090 0.0374762684 - - unnamed protein product [Coffea canephora]
4 Hb_003337_010 0.0393634953 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002014_120 0.0411813068 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
6 Hb_004652_040 0.0456153901 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_103000_010 0.0523620911 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
8 Hb_000352_020 0.0568516192 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
9 Hb_003073_060 0.0624550796 - - -
10 Hb_179367_010 0.0649303204 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
11 Hb_005428_010 0.0815430625 - - cytochrome P450, putative [Ricinus communis]
12 Hb_003442_020 0.0851623766 - - ccd1, putative [Ricinus communis]
13 Hb_104362_020 0.0852196176 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_000174_130 0.0857858971 - - flowering locus T-like protein [Fagus crenata]
15 Hb_007125_020 0.0879612331 - - hypothetical protein POPTR_0003s18010g [Populus trichocarpa]
16 Hb_010261_050 0.0934724067 - - DNA binding protein, putative [Ricinus communis]
17 Hb_166700_010 0.098768843 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
18 Hb_001104_250 0.104174615 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
19 Hb_151027_010 0.1063541001 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
20 Hb_123887_010 0.1145359619 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]

Gene co-expression network

sample Hb_001948_100 Hb_001948_100 Hb_009838_030 Hb_009838_030 Hb_001948_100--Hb_009838_030 Hb_000152_090 Hb_000152_090 Hb_001948_100--Hb_000152_090 Hb_003337_010 Hb_003337_010 Hb_001948_100--Hb_003337_010 Hb_002014_120 Hb_002014_120 Hb_001948_100--Hb_002014_120 Hb_004652_040 Hb_004652_040 Hb_001948_100--Hb_004652_040 Hb_103000_010 Hb_103000_010 Hb_001948_100--Hb_103000_010 Hb_000352_020 Hb_000352_020 Hb_009838_030--Hb_000352_020 Hb_009838_030--Hb_002014_120 Hb_009838_030--Hb_004652_040 Hb_179367_010 Hb_179367_010 Hb_009838_030--Hb_179367_010 Hb_009838_030--Hb_003337_010 Hb_000152_090--Hb_009838_030 Hb_003073_060 Hb_003073_060 Hb_000152_090--Hb_003073_060 Hb_000152_090--Hb_003337_010 Hb_000152_090--Hb_002014_120 Hb_001104_250 Hb_001104_250 Hb_000152_090--Hb_001104_250 Hb_003337_010--Hb_103000_010 Hb_003337_010--Hb_004652_040 Hb_003337_010--Hb_002014_120 Hb_003337_010--Hb_179367_010 Hb_002014_120--Hb_004652_040 Hb_002014_120--Hb_103000_010 Hb_002014_120--Hb_179367_010 Hb_004652_040--Hb_103000_010 Hb_004652_040--Hb_179367_010 Hb_000174_130 Hb_000174_130 Hb_004652_040--Hb_000174_130 Hb_103000_010--Hb_179367_010 Hb_103000_010--Hb_000174_130 Hb_166700_010 Hb_166700_010 Hb_103000_010--Hb_166700_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.3221 0.181697 0.994393 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis