Hb_166700_010

Information

Type -
Description -
Location Contig166700: 2948-3701
Sequence    

Annotation

kegg
ID rcu:RCOM_0926510
description chloroplast-targeted copper chaperone, putative
nr
ID XP_002515584.1
description chloroplast-targeted copper chaperone, putative [Ricinus communis]
swissprot
ID Q94BT9
description Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=1
trembl
ID B9RPB5
description Chloroplast-targeted copper chaperone, putative OS=Ricinus communis GN=RCOM_0926510 PE=4 SV=1
Gene Ontology
ID GO:0046872
description heavy metal transport detoxification superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_166700_010 0.0 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
2 Hb_000174_130 0.01649152 - - flowering locus T-like protein [Fagus crenata]
3 Hb_151027_010 0.0431546171 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
4 Hb_103000_010 0.0465672528 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
5 Hb_179367_010 0.0518311144 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_104362_020 0.0520806232 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_004652_040 0.0553269273 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_010261_050 0.0555522483 - - DNA binding protein, putative [Ricinus communis]
9 Hb_003337_010 0.0621142279 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002014_120 0.064068071 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
11 Hb_001006_130 0.0687056206 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
12 Hb_174829_030 0.0821834034 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000917_220 0.0822832243 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
14 Hb_009838_030 0.0921072369 - - Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
15 Hb_003777_100 0.0970524055 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
16 Hb_003442_020 0.0974680104 - - ccd1, putative [Ricinus communis]
17 Hb_001948_100 0.098768843 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000224_020 0.1008359754 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
19 Hb_003540_010 0.1038951769 - - -
20 Hb_000352_020 0.1049729772 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]

Gene co-expression network

sample Hb_166700_010 Hb_166700_010 Hb_000174_130 Hb_000174_130 Hb_166700_010--Hb_000174_130 Hb_151027_010 Hb_151027_010 Hb_166700_010--Hb_151027_010 Hb_103000_010 Hb_103000_010 Hb_166700_010--Hb_103000_010 Hb_179367_010 Hb_179367_010 Hb_166700_010--Hb_179367_010 Hb_104362_020 Hb_104362_020 Hb_166700_010--Hb_104362_020 Hb_004652_040 Hb_004652_040 Hb_166700_010--Hb_004652_040 Hb_000174_130--Hb_103000_010 Hb_000174_130--Hb_179367_010 Hb_000174_130--Hb_151027_010 Hb_000174_130--Hb_104362_020 Hb_000174_130--Hb_004652_040 Hb_151027_010--Hb_104362_020 Hb_151027_010--Hb_179367_010 Hb_174829_030 Hb_174829_030 Hb_151027_010--Hb_174829_030 Hb_151027_010--Hb_004652_040 Hb_103000_010--Hb_004652_040 Hb_003337_010 Hb_003337_010 Hb_103000_010--Hb_003337_010 Hb_002014_120 Hb_002014_120 Hb_103000_010--Hb_002014_120 Hb_103000_010--Hb_179367_010 Hb_179367_010--Hb_104362_020 Hb_179367_010--Hb_002014_120 Hb_179367_010--Hb_004652_040 Hb_104362_020--Hb_002014_120 Hb_104362_020--Hb_004652_040 Hb_104362_020--Hb_103000_010 Hb_004652_040--Hb_002014_120 Hb_004652_040--Hb_003337_010 Hb_009838_030 Hb_009838_030 Hb_004652_040--Hb_009838_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.279653 0.197375 1.55565 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis