Hb_002014_120

Information

Type transcription factor
Description TF Family: OFP
Location Contig2014: 125764-126669
Sequence    

Annotation

kegg
ID pop:POPTR_0018s08740g
description POPTRDRAFT_779303; hypothetical protein
nr
ID XP_011043465.1
description PREDICTED: transcription repressor OFP8 [Populus euphratica]
swissprot
ID Q3E9B4
description Transcription repressor OFP8 OS=Arabidopsis thaliana GN=OFP8 PE=2 SV=1
trembl
ID A0A067KBS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07242 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002014_120 0.0 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
2 Hb_004652_040 0.0104148494 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_103000_010 0.0237697241 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
4 Hb_179367_010 0.0239698481 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
5 Hb_003337_010 0.0286092473 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009838_030 0.0286546391 - - Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
7 Hb_001948_100 0.0411813068 - - conserved hypothetical protein [Ricinus communis]
8 Hb_104362_020 0.0447018638 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
9 Hb_000352_020 0.0472389933 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
10 Hb_000174_130 0.0487801803 - - flowering locus T-like protein [Fagus crenata]
11 Hb_166700_010 0.064068071 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
12 Hb_151027_010 0.0654391809 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
13 Hb_000152_090 0.0782781992 - - unnamed protein product [Coffea canephora]
14 Hb_010261_050 0.0800833719 - - DNA binding protein, putative [Ricinus communis]
15 Hb_003073_060 0.0842562762 - - -
16 Hb_005428_010 0.0916094028 - - cytochrome P450, putative [Ricinus communis]
17 Hb_007125_020 0.0921865827 - - hypothetical protein POPTR_0003s18010g [Populus trichocarpa]
18 Hb_003442_020 0.0936832429 - - ccd1, putative [Ricinus communis]
19 Hb_001006_130 0.1036734435 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
20 Hb_174829_030 0.1089029915 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002014_120 Hb_002014_120 Hb_004652_040 Hb_004652_040 Hb_002014_120--Hb_004652_040 Hb_103000_010 Hb_103000_010 Hb_002014_120--Hb_103000_010 Hb_179367_010 Hb_179367_010 Hb_002014_120--Hb_179367_010 Hb_003337_010 Hb_003337_010 Hb_002014_120--Hb_003337_010 Hb_009838_030 Hb_009838_030 Hb_002014_120--Hb_009838_030 Hb_001948_100 Hb_001948_100 Hb_002014_120--Hb_001948_100 Hb_004652_040--Hb_103000_010 Hb_004652_040--Hb_003337_010 Hb_004652_040--Hb_179367_010 Hb_004652_040--Hb_009838_030 Hb_000174_130 Hb_000174_130 Hb_004652_040--Hb_000174_130 Hb_103000_010--Hb_003337_010 Hb_103000_010--Hb_179367_010 Hb_103000_010--Hb_000174_130 Hb_166700_010 Hb_166700_010 Hb_103000_010--Hb_166700_010 Hb_104362_020 Hb_104362_020 Hb_179367_010--Hb_104362_020 Hb_179367_010--Hb_000174_130 Hb_151027_010 Hb_151027_010 Hb_179367_010--Hb_151027_010 Hb_003337_010--Hb_001948_100 Hb_003337_010--Hb_179367_010 Hb_003337_010--Hb_009838_030 Hb_000352_020 Hb_000352_020 Hb_009838_030--Hb_000352_020 Hb_009838_030--Hb_001948_100 Hb_009838_030--Hb_179367_010 Hb_000152_090 Hb_000152_090 Hb_001948_100--Hb_000152_090 Hb_001948_100--Hb_004652_040 Hb_001948_100--Hb_103000_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.246916 0.174442 0.976459 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis