Hb_000174_130

Information

Type -
Description -
Location Contig174: 165286-167966
Sequence    

Annotation

kegg
ID tcc:TCM_023287
description PEBP (phosphatidylethanolamine-binding protein) family protein
nr
ID BAP28173.1
description flowering locus T-like protein [Fagus crenata]
swissprot
ID Q93WI9
description Protein HEADING DATE 3A OS=Oryza sativa subsp. japonica GN=HD3A PE=1 SV=1
trembl
ID A0A077K8V1
description Flowering locus T-like protein OS=Fagus crenata GN=FT PE=2 SV=1
Gene Ontology
ID GO:0008429
description flowering locus t

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_130 0.0 - - flowering locus T-like protein [Fagus crenata]
2 Hb_166700_010 0.01649152 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
3 Hb_103000_010 0.0345707947 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
4 Hb_179367_010 0.0353750594 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
5 Hb_151027_010 0.0358940791 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
6 Hb_104362_020 0.0378036082 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_004652_040 0.0408794579 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_002014_120 0.0487801803 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
9 Hb_003337_010 0.0518089106 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010261_050 0.0613300224 - - DNA binding protein, putative [Ricinus communis]
11 Hb_001006_130 0.0720786679 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
12 Hb_009838_030 0.0763372391 - - Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
13 Hb_174829_030 0.0801071322 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001948_100 0.0857858971 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000352_020 0.088603411 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
16 Hb_000917_220 0.0910350318 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
17 Hb_003442_020 0.097800111 - - ccd1, putative [Ricinus communis]
18 Hb_000224_020 0.103704944 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
19 Hb_001006_080 0.1064864207 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
20 Hb_003777_100 0.1082382677 - - Auxin-induced protein 5NG4, putative [Ricinus communis]

Gene co-expression network

sample Hb_000174_130 Hb_000174_130 Hb_166700_010 Hb_166700_010 Hb_000174_130--Hb_166700_010 Hb_103000_010 Hb_103000_010 Hb_000174_130--Hb_103000_010 Hb_179367_010 Hb_179367_010 Hb_000174_130--Hb_179367_010 Hb_151027_010 Hb_151027_010 Hb_000174_130--Hb_151027_010 Hb_104362_020 Hb_104362_020 Hb_000174_130--Hb_104362_020 Hb_004652_040 Hb_004652_040 Hb_000174_130--Hb_004652_040 Hb_166700_010--Hb_151027_010 Hb_166700_010--Hb_103000_010 Hb_166700_010--Hb_179367_010 Hb_166700_010--Hb_104362_020 Hb_166700_010--Hb_004652_040 Hb_103000_010--Hb_004652_040 Hb_003337_010 Hb_003337_010 Hb_103000_010--Hb_003337_010 Hb_002014_120 Hb_002014_120 Hb_103000_010--Hb_002014_120 Hb_103000_010--Hb_179367_010 Hb_179367_010--Hb_104362_020 Hb_179367_010--Hb_002014_120 Hb_179367_010--Hb_004652_040 Hb_179367_010--Hb_151027_010 Hb_151027_010--Hb_104362_020 Hb_174829_030 Hb_174829_030 Hb_151027_010--Hb_174829_030 Hb_151027_010--Hb_004652_040 Hb_104362_020--Hb_002014_120 Hb_104362_020--Hb_004652_040 Hb_104362_020--Hb_103000_010 Hb_004652_040--Hb_002014_120 Hb_004652_040--Hb_003337_010 Hb_009838_030 Hb_009838_030 Hb_004652_040--Hb_009838_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0543317 0.0403581 0.283389 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis