Hb_000769_050

Information

Type -
Description -
Location Contig769: 89880-90434
Sequence    

Annotation

kegg
ID pop:POPTR_0954s00200g
description hypothetical protein
nr
ID KDO36233.1
description hypothetical protein CISIN_1g030637mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067D0H5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030637mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57547: 38444-90768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000769_050 0.0 - - hypothetical protein CISIN_1g030637mg [Citrus sinensis]
2 Hb_001104_250 0.0583389519 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
3 Hb_002548_010 0.0668054872 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
4 Hb_123887_010 0.089142734 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
5 Hb_000152_090 0.0936031676 - - unnamed protein product [Coffea canephora]
6 Hb_000167_090 0.0976408542 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003442_020 0.102160894 - - ccd1, putative [Ricinus communis]
8 Hb_003839_060 0.1035789452 - - PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]
9 Hb_001414_120 0.1072186761 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
10 Hb_023536_020 0.1127897078 - - Nicotianamine synthase, putative [Ricinus communis]
11 Hb_001948_100 0.1194764735 - - conserved hypothetical protein [Ricinus communis]
12 Hb_174644_010 0.1292517206 - - -
13 Hb_003337_010 0.1309760066 - - conserved hypothetical protein [Ricinus communis]
14 Hb_182625_010 0.1320825441 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
15 Hb_001766_140 0.1322667846 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
16 Hb_000373_110 0.1331640991 - - Nodulin, putative [Ricinus communis]
17 Hb_027402_110 0.1376737043 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
18 Hb_002422_010 0.1392585145 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
19 Hb_000203_090 0.1393423086 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
20 Hb_003529_010 0.1402739301 - - PREDICTED: disease resistance protein RPS6-like [Jatropha curcas]

Gene co-expression network

sample Hb_000769_050 Hb_000769_050 Hb_001104_250 Hb_001104_250 Hb_000769_050--Hb_001104_250 Hb_002548_010 Hb_002548_010 Hb_000769_050--Hb_002548_010 Hb_123887_010 Hb_123887_010 Hb_000769_050--Hb_123887_010 Hb_000152_090 Hb_000152_090 Hb_000769_050--Hb_000152_090 Hb_000167_090 Hb_000167_090 Hb_000769_050--Hb_000167_090 Hb_003442_020 Hb_003442_020 Hb_000769_050--Hb_003442_020 Hb_001104_250--Hb_002548_010 Hb_003839_060 Hb_003839_060 Hb_001104_250--Hb_003839_060 Hb_001104_250--Hb_003442_020 Hb_001104_250--Hb_123887_010 Hb_001104_250--Hb_000152_090 Hb_002548_010--Hb_000167_090 Hb_000203_090 Hb_000203_090 Hb_002548_010--Hb_000203_090 Hb_002548_010--Hb_000152_090 Hb_182625_010 Hb_182625_010 Hb_002548_010--Hb_182625_010 Hb_123887_010--Hb_003442_020 Hb_123887_010--Hb_003839_060 Hb_010261_050 Hb_010261_050 Hb_123887_010--Hb_010261_050 Hb_174644_010 Hb_174644_010 Hb_123887_010--Hb_174644_010 Hb_001948_100 Hb_001948_100 Hb_000152_090--Hb_001948_100 Hb_009838_030 Hb_009838_030 Hb_000152_090--Hb_009838_030 Hb_003073_060 Hb_003073_060 Hb_000152_090--Hb_003073_060 Hb_003337_010 Hb_003337_010 Hb_000152_090--Hb_003337_010 Hb_002014_120 Hb_002014_120 Hb_000152_090--Hb_002014_120 Hb_039410_010 Hb_039410_010 Hb_000167_090--Hb_039410_010 Hb_000167_090--Hb_000203_090 Hb_002422_010 Hb_002422_010 Hb_000167_090--Hb_002422_010 Hb_000167_090--Hb_001104_250 Hb_003442_020--Hb_010261_050 Hb_003442_020--Hb_003839_060 Hb_003442_020--Hb_003337_010 Hb_003777_100 Hb_003777_100 Hb_003442_020--Hb_003777_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.6996 2.17951 20.0641 0 0.157801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0368109 0

CAGE analysis