Hb_010261_050

Information

Type -
Description -
Location Contig10261: 58578-58967
Sequence    

Annotation

kegg
ID rcu:RCOM_1615060
description DNA binding protein, putative
nr
ID XP_002511843.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q8L7L5
description AT-hook motif nuclear-localized protein 11 OS=Arabidopsis thaliana GN=AHL11 PE=2 SV=1
trembl
ID B9RDQ4
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1615060 PE=4 SV=1
Gene Ontology
ID GO:0003677
description at hook motif dna-binding family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010261_050 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_003442_020 0.0470895693 - - ccd1, putative [Ricinus communis]
3 Hb_003777_100 0.0548454205 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
4 Hb_166700_010 0.0555522483 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
5 Hb_103000_010 0.0568629952 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
6 Hb_003337_010 0.0571662114 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000174_130 0.0613300224 - - flowering locus T-like protein [Fagus crenata]
8 Hb_004652_040 0.0700692236 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_002014_120 0.0800833719 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
10 Hb_179367_010 0.0847432402 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
11 Hb_000164_250 0.0848458815 - - hypothetical protein CISIN_1g040645mg [Citrus sinensis]
12 Hb_003839_060 0.0856480245 - - PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]
13 Hb_001948_100 0.0934724067 - - conserved hypothetical protein [Ricinus communis]
14 Hb_104362_020 0.0963597357 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_151027_010 0.0964136141 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
16 Hb_123887_010 0.1009435936 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
17 Hb_001006_130 0.1037621448 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
18 Hb_009838_030 0.1055905253 - - Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
19 Hb_000152_090 0.1126262634 - - unnamed protein product [Coffea canephora]
20 Hb_005695_050 0.1132482301 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]

Gene co-expression network

sample Hb_010261_050 Hb_010261_050 Hb_003442_020 Hb_003442_020 Hb_010261_050--Hb_003442_020 Hb_003777_100 Hb_003777_100 Hb_010261_050--Hb_003777_100 Hb_166700_010 Hb_166700_010 Hb_010261_050--Hb_166700_010 Hb_103000_010 Hb_103000_010 Hb_010261_050--Hb_103000_010 Hb_003337_010 Hb_003337_010 Hb_010261_050--Hb_003337_010 Hb_000174_130 Hb_000174_130 Hb_010261_050--Hb_000174_130 Hb_003839_060 Hb_003839_060 Hb_003442_020--Hb_003839_060 Hb_003442_020--Hb_003337_010 Hb_001104_250 Hb_001104_250 Hb_003442_020--Hb_001104_250 Hb_123887_010 Hb_123887_010 Hb_003442_020--Hb_123887_010 Hb_003442_020--Hb_003777_100 Hb_000164_250 Hb_000164_250 Hb_003777_100--Hb_000164_250 Hb_032280_010 Hb_032280_010 Hb_003777_100--Hb_032280_010 Hb_000172_260 Hb_000172_260 Hb_003777_100--Hb_000172_260 Hb_003777_100--Hb_003839_060 Hb_166700_010--Hb_000174_130 Hb_151027_010 Hb_151027_010 Hb_166700_010--Hb_151027_010 Hb_166700_010--Hb_103000_010 Hb_179367_010 Hb_179367_010 Hb_166700_010--Hb_179367_010 Hb_104362_020 Hb_104362_020 Hb_166700_010--Hb_104362_020 Hb_004652_040 Hb_004652_040 Hb_166700_010--Hb_004652_040 Hb_103000_010--Hb_004652_040 Hb_103000_010--Hb_003337_010 Hb_002014_120 Hb_002014_120 Hb_103000_010--Hb_002014_120 Hb_103000_010--Hb_179367_010 Hb_103000_010--Hb_000174_130 Hb_003337_010--Hb_004652_040 Hb_003337_010--Hb_002014_120 Hb_001948_100 Hb_001948_100 Hb_003337_010--Hb_001948_100 Hb_003337_010--Hb_179367_010 Hb_009838_030 Hb_009838_030 Hb_003337_010--Hb_009838_030 Hb_000174_130--Hb_179367_010 Hb_000174_130--Hb_151027_010 Hb_000174_130--Hb_104362_020 Hb_000174_130--Hb_004652_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.17184 0.0695402 0.748727 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis