Hb_032280_010

Information

Type -
Description -
Location Contig32280: 2599-3342
Sequence    

Annotation

kegg
ID rcu:RCOM_0574930
description receptor serine/threonine kinase, putative
nr
ID XP_012066187.1
description PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
swissprot
ID P0CH02
description Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana GN=ATL21B PE=3 SV=1
trembl
ID A0A067LE94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23767 PE=3 SV=1
Gene Ontology
ID GO:0016772
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032280_010 0.0 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
2 Hb_000172_260 0.0349803513 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
3 Hb_000164_250 0.0408406207 - - hypothetical protein CISIN_1g040645mg [Citrus sinensis]
4 Hb_041067_010 0.0515697441 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
5 Hb_004148_030 0.0549272783 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
6 Hb_003777_100 0.0705114101 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
7 Hb_103931_010 0.0848373782 - - -
8 Hb_001147_120 0.08656031 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
9 Hb_001825_030 0.0867847447 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
10 Hb_002217_480 0.086808652 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
11 Hb_000284_090 0.086837863 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
12 Hb_000321_020 0.0882199883 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
13 Hb_002304_120 0.089615455 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001053_100 0.0912348198 - - DNA-damage-inducible protein f, putative [Ricinus communis]
15 Hb_012760_080 0.0917060849 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000327_050 0.0917971268 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
17 Hb_015085_010 0.0921622534 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
18 Hb_013399_040 0.0941761957 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
19 Hb_058095_010 0.0966102937 - - PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
20 Hb_170674_020 0.0979488814 - - hypothetical protein JCGZ_23768 [Jatropha curcas]

Gene co-expression network

sample Hb_032280_010 Hb_032280_010 Hb_000172_260 Hb_000172_260 Hb_032280_010--Hb_000172_260 Hb_000164_250 Hb_000164_250 Hb_032280_010--Hb_000164_250 Hb_041067_010 Hb_041067_010 Hb_032280_010--Hb_041067_010 Hb_004148_030 Hb_004148_030 Hb_032280_010--Hb_004148_030 Hb_003777_100 Hb_003777_100 Hb_032280_010--Hb_003777_100 Hb_103931_010 Hb_103931_010 Hb_032280_010--Hb_103931_010 Hb_000172_260--Hb_000164_250 Hb_000172_260--Hb_003777_100 Hb_000172_260--Hb_004148_030 Hb_000172_260--Hb_041067_010 Hb_000172_260--Hb_103931_010 Hb_000164_250--Hb_003777_100 Hb_000164_250--Hb_041067_010 Hb_000164_250--Hb_103931_010 Hb_010261_050 Hb_010261_050 Hb_000164_250--Hb_010261_050 Hb_041067_010--Hb_004148_030 Hb_002217_480 Hb_002217_480 Hb_041067_010--Hb_002217_480 Hb_015085_010 Hb_015085_010 Hb_041067_010--Hb_015085_010 Hb_004148_030--Hb_002217_480 Hb_002304_120 Hb_002304_120 Hb_004148_030--Hb_002304_120 Hb_000321_020 Hb_000321_020 Hb_004148_030--Hb_000321_020 Hb_000327_050 Hb_000327_050 Hb_004148_030--Hb_000327_050 Hb_013399_040 Hb_013399_040 Hb_004148_030--Hb_013399_040 Hb_001147_120 Hb_001147_120 Hb_004148_030--Hb_001147_120 Hb_003777_100--Hb_010261_050 Hb_003442_020 Hb_003442_020 Hb_003777_100--Hb_003442_020 Hb_003839_060 Hb_003839_060 Hb_003777_100--Hb_003839_060 Hb_103931_010--Hb_015085_010 Hb_001053_100 Hb_001053_100 Hb_103931_010--Hb_001053_100 Hb_103931_010--Hb_041067_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.388735 0.0354998 1.96029 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis