Hb_000172_260

Information

Type -
Description -
Location Contig172: 307275-311400
Sequence    

Annotation

kegg
ID pop:POPTR_0007s05860g
description POPTRDRAFT_562634; Early nodulin 70 family protein
nr
ID XP_012093200.1
description PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
swissprot
ID O04722
description Sulfate transporter 2.1 OS=Arabidopsis thaliana GN=SULTR2;1 PE=2 SV=1
trembl
ID A0A067LER4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24086 PE=4 SV=1
Gene Ontology
ID GO:0005623
description sulfate transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16133: 307567-308395 , PASA_asmbl_16134: 308893-309346 , PASA_asmbl_16135: 309436-310800 , PASA_asmbl_16136: 310946-311590 , PASA_asmbl_16137: 311107-311597
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_260 0.0 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
2 Hb_032280_010 0.0349803513 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
3 Hb_000164_250 0.0496023142 - - hypothetical protein CISIN_1g040645mg [Citrus sinensis]
4 Hb_003777_100 0.0726891618 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
5 Hb_004148_030 0.0730994599 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
6 Hb_041067_010 0.0751947077 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
7 Hb_103931_010 0.0863229335 - - -
8 Hb_174644_010 0.0875795004 - - -
9 Hb_000284_090 0.095506711 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
10 Hb_001825_030 0.0955709173 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
11 Hb_012760_080 0.0960227269 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001147_120 0.0960619691 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
13 Hb_001053_100 0.0976154198 - - DNA-damage-inducible protein f, putative [Ricinus communis]
14 Hb_058095_010 0.0985935751 - - PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
15 Hb_003839_060 0.0986990608 - - PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]
16 Hb_015085_010 0.0991348041 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
17 Hb_000321_020 0.1009771122 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
18 Hb_002304_120 0.1031925088 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002217_480 0.1062013866 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
20 Hb_000327_050 0.1062488804 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000172_260 Hb_000172_260 Hb_032280_010 Hb_032280_010 Hb_000172_260--Hb_032280_010 Hb_000164_250 Hb_000164_250 Hb_000172_260--Hb_000164_250 Hb_003777_100 Hb_003777_100 Hb_000172_260--Hb_003777_100 Hb_004148_030 Hb_004148_030 Hb_000172_260--Hb_004148_030 Hb_041067_010 Hb_041067_010 Hb_000172_260--Hb_041067_010 Hb_103931_010 Hb_103931_010 Hb_000172_260--Hb_103931_010 Hb_032280_010--Hb_000164_250 Hb_032280_010--Hb_041067_010 Hb_032280_010--Hb_004148_030 Hb_032280_010--Hb_003777_100 Hb_032280_010--Hb_103931_010 Hb_000164_250--Hb_003777_100 Hb_000164_250--Hb_041067_010 Hb_000164_250--Hb_103931_010 Hb_010261_050 Hb_010261_050 Hb_000164_250--Hb_010261_050 Hb_003777_100--Hb_010261_050 Hb_003442_020 Hb_003442_020 Hb_003777_100--Hb_003442_020 Hb_003839_060 Hb_003839_060 Hb_003777_100--Hb_003839_060 Hb_002217_480 Hb_002217_480 Hb_004148_030--Hb_002217_480 Hb_002304_120 Hb_002304_120 Hb_004148_030--Hb_002304_120 Hb_000321_020 Hb_000321_020 Hb_004148_030--Hb_000321_020 Hb_000327_050 Hb_000327_050 Hb_004148_030--Hb_000327_050 Hb_013399_040 Hb_013399_040 Hb_004148_030--Hb_013399_040 Hb_001147_120 Hb_001147_120 Hb_004148_030--Hb_001147_120 Hb_041067_010--Hb_004148_030 Hb_041067_010--Hb_002217_480 Hb_015085_010 Hb_015085_010 Hb_041067_010--Hb_015085_010 Hb_103931_010--Hb_015085_010 Hb_001053_100 Hb_001053_100 Hb_103931_010--Hb_001053_100 Hb_103931_010--Hb_041067_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.7087 0.51859 25.9136 0.00914992 0.0281547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0222111 0 0 0 0

CAGE analysis