Hb_015085_010

Information

Type -
Description -
Location Contig15085: 2943-3676
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11360g
description POPTRDRAFT_825947; hypothetical protein
nr
ID XP_002324529.1
description hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IMB8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s11360g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015085_010 0.0 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
2 Hb_041067_010 0.0687176304 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
3 Hb_103931_010 0.0713155408 - - -
4 Hb_001053_100 0.0819571792 - - DNA-damage-inducible protein f, putative [Ricinus communis]
5 Hb_032280_010 0.0921622534 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
6 Hb_000164_250 0.0941447064 - - hypothetical protein CISIN_1g040645mg [Citrus sinensis]
7 Hb_003747_080 0.0964437956 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
8 Hb_181191_010 0.0972985698 - - kinase, putative [Ricinus communis]
9 Hb_000172_260 0.0991348041 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
10 Hb_005463_120 0.0993610383 - - gibberellin 20-oxidase, putative [Ricinus communis]
11 Hb_002217_480 0.099486922 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
12 Hb_137821_010 0.1008603908 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
13 Hb_005183_020 0.1023229225 - - hypothetical protein JCGZ_04285 [Jatropha curcas]
14 Hb_004148_030 0.1029521831 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
15 Hb_008727_090 0.1057192114 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
16 Hb_003777_100 0.1095481974 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
17 Hb_000203_120 0.1102206724 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000527_090 0.1112288553 - - serine carboxypeptidase, putative [Ricinus communis]
19 Hb_000203_110 0.1127753026 - - -
20 Hb_001396_080 0.1142469515 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_015085_010 Hb_015085_010 Hb_041067_010 Hb_041067_010 Hb_015085_010--Hb_041067_010 Hb_103931_010 Hb_103931_010 Hb_015085_010--Hb_103931_010 Hb_001053_100 Hb_001053_100 Hb_015085_010--Hb_001053_100 Hb_032280_010 Hb_032280_010 Hb_015085_010--Hb_032280_010 Hb_000164_250 Hb_000164_250 Hb_015085_010--Hb_000164_250 Hb_003747_080 Hb_003747_080 Hb_015085_010--Hb_003747_080 Hb_004148_030 Hb_004148_030 Hb_041067_010--Hb_004148_030 Hb_041067_010--Hb_032280_010 Hb_002217_480 Hb_002217_480 Hb_041067_010--Hb_002217_480 Hb_041067_010--Hb_000164_250 Hb_000172_260 Hb_000172_260 Hb_041067_010--Hb_000172_260 Hb_103931_010--Hb_001053_100 Hb_103931_010--Hb_000164_250 Hb_103931_010--Hb_041067_010 Hb_103931_010--Hb_032280_010 Hb_103931_010--Hb_000172_260 Hb_000086_160 Hb_000086_160 Hb_001053_100--Hb_000086_160 Hb_001053_100--Hb_041067_010 Hb_001396_080 Hb_001396_080 Hb_001053_100--Hb_001396_080 Hb_005183_020 Hb_005183_020 Hb_001053_100--Hb_005183_020 Hb_032280_010--Hb_000172_260 Hb_032280_010--Hb_000164_250 Hb_032280_010--Hb_004148_030 Hb_003777_100 Hb_003777_100 Hb_032280_010--Hb_003777_100 Hb_000164_250--Hb_003777_100 Hb_000164_250--Hb_000172_260 Hb_010261_050 Hb_010261_050 Hb_000164_250--Hb_010261_050 Hb_000203_110 Hb_000203_110 Hb_003747_080--Hb_000203_110 Hb_181191_010 Hb_181191_010 Hb_003747_080--Hb_181191_010 Hb_137821_010 Hb_137821_010 Hb_003747_080--Hb_137821_010 Hb_120496_010 Hb_120496_010 Hb_003747_080--Hb_120496_010 Hb_000527_090 Hb_000527_090 Hb_003747_080--Hb_000527_090 Hb_008727_090 Hb_008727_090 Hb_003747_080--Hb_008727_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.38637 1.25147 51.8591 0 0.411397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis