Hb_005183_020

Information

Type -
Description -
Location Contig5183: 6420-6689
Sequence    

Annotation

kegg
ID tcc:TCM_033864
description Calcium-binding EF-hand family protein, putative
nr
ID KDP38360.1
description hypothetical protein JCGZ_04285 [Jatropha curcas]
swissprot
ID Q9LF54
description Probable calcium-binding protein CML29 OS=Arabidopsis thaliana GN=CML29 PE=3 SV=1
trembl
ID A0A067L1J7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04285 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding ef-hand family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 041_F03.ab1: 6269-6754

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005183_020 0.0 - - hypothetical protein JCGZ_04285 [Jatropha curcas]
2 Hb_001053_100 0.0837615746 - - DNA-damage-inducible protein f, putative [Ricinus communis]
3 Hb_001269_440 0.0932764411 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
4 Hb_001396_080 0.1004250673 - - conserved hypothetical protein [Ricinus communis]
5 Hb_015085_010 0.1023229225 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
6 Hb_000086_160 0.1023998513 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
7 Hb_000032_160 0.1026911283 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006061_020 0.1084520512 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
9 Hb_103931_010 0.1097369952 - - -
10 Hb_007472_060 0.115136418 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
11 Hb_006452_080 0.1153719425 - - Nodulin, putative [Ricinus communis]
12 Hb_000027_010 0.1158281299 - - -
13 Hb_002025_190 0.118413161 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
14 Hb_003090_250 0.1189462464 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
15 Hb_011689_090 0.1189687076 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
16 Hb_006275_080 0.1197043784 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
17 Hb_041067_010 0.1197864208 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
18 Hb_000527_090 0.1198989059 - - serine carboxypeptidase, putative [Ricinus communis]
19 Hb_074100_010 0.1215048158 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
20 Hb_116679_010 0.1274178861 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]

Gene co-expression network

sample Hb_005183_020 Hb_005183_020 Hb_001053_100 Hb_001053_100 Hb_005183_020--Hb_001053_100 Hb_001269_440 Hb_001269_440 Hb_005183_020--Hb_001269_440 Hb_001396_080 Hb_001396_080 Hb_005183_020--Hb_001396_080 Hb_015085_010 Hb_015085_010 Hb_005183_020--Hb_015085_010 Hb_000086_160 Hb_000086_160 Hb_005183_020--Hb_000086_160 Hb_000032_160 Hb_000032_160 Hb_005183_020--Hb_000032_160 Hb_001053_100--Hb_000086_160 Hb_103931_010 Hb_103931_010 Hb_001053_100--Hb_103931_010 Hb_041067_010 Hb_041067_010 Hb_001053_100--Hb_041067_010 Hb_001053_100--Hb_015085_010 Hb_001053_100--Hb_001396_080 Hb_002837_150 Hb_002837_150 Hb_001269_440--Hb_002837_150 Hb_001269_440--Hb_000086_160 Hb_002025_190 Hb_002025_190 Hb_001269_440--Hb_002025_190 Hb_000025_150 Hb_000025_150 Hb_001269_440--Hb_000025_150 Hb_003212_030 Hb_003212_030 Hb_001269_440--Hb_003212_030 Hb_001396_080--Hb_000086_160 Hb_001396_080--Hb_041067_010 Hb_000527_090 Hb_000527_090 Hb_001396_080--Hb_000527_090 Hb_006452_080 Hb_006452_080 Hb_001396_080--Hb_006452_080 Hb_015085_010--Hb_041067_010 Hb_015085_010--Hb_103931_010 Hb_032280_010 Hb_032280_010 Hb_015085_010--Hb_032280_010 Hb_000164_250 Hb_000164_250 Hb_015085_010--Hb_000164_250 Hb_003747_080 Hb_003747_080 Hb_015085_010--Hb_003747_080 Hb_000086_160--Hb_103931_010 Hb_000027_010 Hb_000027_010 Hb_000086_160--Hb_000027_010 Hb_000086_160--Hb_003212_030 Hb_013399_040 Hb_013399_040 Hb_000032_160--Hb_013399_040 Hb_170674_020 Hb_170674_020 Hb_000032_160--Hb_170674_020 Hb_000327_050 Hb_000327_050 Hb_000032_160--Hb_000327_050 Hb_000318_070 Hb_000318_070 Hb_000032_160--Hb_000318_070 Hb_000032_160--Hb_001269_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 27.7552 2.9235 219.577 0.203928 2.43873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.993299 0 0 0.733575 2.8325

CAGE analysis