Hb_000025_150

Information

Type transcription factor
Description TF Family: HSF
Location Contig25: 131465-133054
Sequence    

Annotation

kegg
ID pop:POPTR_0001s28040g
description POPTRDRAFT_641429; hypothetical protein
nr
ID XP_002298460.1
description hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
swissprot
ID Q9C635
description Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1
trembl
ID B9GG64
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28040g PE=3 SV=1
Gene Ontology
ID GO:0005634
description heat stress transcription factor b-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_150 0.0 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
2 Hb_000438_180 0.0774602737 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
3 Hb_180293_010 0.0817260938 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
4 Hb_001401_110 0.0889062893 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
5 Hb_001584_250 0.0923774254 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
6 Hb_001269_430 0.094370056 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
7 Hb_004807_070 0.0945335609 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
8 Hb_006061_020 0.0972044961 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
9 Hb_011930_090 0.0984252257 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
10 Hb_001269_440 0.1002590768 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
11 Hb_187906_010 0.1009149588 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
12 Hb_002025_190 0.1025645197 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
13 Hb_000999_060 0.1034020696 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
14 Hb_003090_250 0.1038112733 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
15 Hb_000429_080 0.1040367824 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009851_120 0.1045763819 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
17 Hb_000754_010 0.108595514 - - unnamed protein product [Vitis vinifera]
18 Hb_024066_030 0.1090801052 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
19 Hb_002837_150 0.1101842891 - - hypothetical protein EUGRSUZ_L00324 [Eucalyptus grandis]
20 Hb_001343_060 0.1105814463 - - Cytochrome P450 [Theobroma cacao]

Gene co-expression network

sample Hb_000025_150 Hb_000025_150 Hb_000438_180 Hb_000438_180 Hb_000025_150--Hb_000438_180 Hb_180293_010 Hb_180293_010 Hb_000025_150--Hb_180293_010 Hb_001401_110 Hb_001401_110 Hb_000025_150--Hb_001401_110 Hb_001584_250 Hb_001584_250 Hb_000025_150--Hb_001584_250 Hb_001269_430 Hb_001269_430 Hb_000025_150--Hb_001269_430 Hb_004807_070 Hb_004807_070 Hb_000025_150--Hb_004807_070 Hb_000438_180--Hb_001401_110 Hb_187906_010 Hb_187906_010 Hb_000438_180--Hb_187906_010 Hb_000438_180--Hb_001269_430 Hb_003711_050 Hb_003711_050 Hb_000438_180--Hb_003711_050 Hb_021443_010 Hb_021443_010 Hb_000438_180--Hb_021443_010 Hb_019299_010 Hb_019299_010 Hb_180293_010--Hb_019299_010 Hb_180293_010--Hb_187906_010 Hb_009851_120 Hb_009851_120 Hb_180293_010--Hb_009851_120 Hb_011930_090 Hb_011930_090 Hb_180293_010--Hb_011930_090 Hb_180293_010--Hb_001401_110 Hb_001401_110--Hb_004807_070 Hb_001401_110--Hb_187906_010 Hb_001401_110--Hb_001269_430 Hb_001712_010 Hb_001712_010 Hb_001401_110--Hb_001712_010 Hb_092272_010 Hb_092272_010 Hb_001401_110--Hb_092272_010 Hb_032299_020 Hb_032299_020 Hb_001584_250--Hb_032299_020 Hb_000429_080 Hb_000429_080 Hb_001584_250--Hb_000429_080 Hb_001584_250--Hb_000438_180 Hb_000201_050 Hb_000201_050 Hb_001584_250--Hb_000201_050 Hb_001584_250--Hb_009851_120 Hb_000007_020 Hb_000007_020 Hb_001584_250--Hb_000007_020 Hb_001343_060 Hb_001343_060 Hb_001269_430--Hb_001343_060 Hb_001269_430--Hb_004807_070 Hb_001269_430--Hb_011930_090 Hb_011344_110 Hb_011344_110 Hb_001269_430--Hb_011344_110 Hb_000201_060 Hb_000201_060 Hb_004807_070--Hb_000201_060 Hb_000754_010 Hb_000754_010 Hb_004807_070--Hb_000754_010 Hb_006018_020 Hb_006018_020 Hb_004807_070--Hb_006018_020 Hb_004807_070--Hb_001343_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.768321 0.162138 5.48423 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0385609 0 0.0154973 0.316138

CAGE analysis