Hb_001584_250

Information

Type -
Description -
Location Contig1584: 143702-146198
Sequence    

Annotation

kegg
ID rcu:RCOM_1436050
description Auxin-induced protein 5NG4, putative
nr
ID XP_002512549.1
description Auxin-induced protein 5NG4, putative [Ricinus communis]
swissprot
ID Q8GXB4
description WAT1-related protein At1g09380 OS=Arabidopsis thaliana GN=At1g09380 PE=2 SV=1
trembl
ID B9RFN0
description Auxin-induced protein 5NG4, putative OS=Ricinus communis GN=RCOM_1436050 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at1g09380

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13986: 143591-146271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_250 0.0 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
2 Hb_032299_020 0.069586983 - - tonoplast intrinsic protein, putative [Ricinus communis]
3 Hb_000429_080 0.0762985106 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000438_180 0.0782668044 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
5 Hb_000201_050 0.0856022566 - - -
6 Hb_009851_120 0.0857131207 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
7 Hb_000007_020 0.0862746374 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
8 Hb_000025_150 0.0923774254 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
9 Hb_001502_010 0.0935769899 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
10 Hb_003711_050 0.0942055276 - - Isoflavone reductase, putative [Ricinus communis]
11 Hb_021443_010 0.0948911604 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
12 Hb_000422_060 0.0959332849 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
13 Hb_002025_190 0.0986822912 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
14 Hb_005695_050 0.098902272 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
15 Hb_074100_010 0.0995951846 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
16 Hb_011930_090 0.1000658382 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
17 Hb_187906_010 0.1013221689 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
18 Hb_008200_010 0.1020508631 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
19 Hb_000999_060 0.1027346216 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
20 Hb_012217_010 0.1062024806 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]

Gene co-expression network

sample Hb_001584_250 Hb_001584_250 Hb_032299_020 Hb_032299_020 Hb_001584_250--Hb_032299_020 Hb_000429_080 Hb_000429_080 Hb_001584_250--Hb_000429_080 Hb_000438_180 Hb_000438_180 Hb_001584_250--Hb_000438_180 Hb_000201_050 Hb_000201_050 Hb_001584_250--Hb_000201_050 Hb_009851_120 Hb_009851_120 Hb_001584_250--Hb_009851_120 Hb_000007_020 Hb_000007_020 Hb_001584_250--Hb_000007_020 Hb_000422_060 Hb_000422_060 Hb_032299_020--Hb_000422_060 Hb_032299_020--Hb_000429_080 Hb_032299_020--Hb_000438_180 Hb_187906_010 Hb_187906_010 Hb_032299_020--Hb_187906_010 Hb_012217_010 Hb_012217_010 Hb_032299_020--Hb_012217_010 Hb_000429_080--Hb_009851_120 Hb_006187_020 Hb_006187_020 Hb_000429_080--Hb_006187_020 Hb_001502_010 Hb_001502_010 Hb_000429_080--Hb_001502_010 Hb_000999_060 Hb_000999_060 Hb_000429_080--Hb_000999_060 Hb_001401_110 Hb_001401_110 Hb_000438_180--Hb_001401_110 Hb_000438_180--Hb_187906_010 Hb_001269_430 Hb_001269_430 Hb_000438_180--Hb_001269_430 Hb_003711_050 Hb_003711_050 Hb_000438_180--Hb_003711_050 Hb_000025_150 Hb_000025_150 Hb_000438_180--Hb_000025_150 Hb_021443_010 Hb_021443_010 Hb_000438_180--Hb_021443_010 Hb_000201_050--Hb_003711_050 Hb_032260_040 Hb_032260_040 Hb_000201_050--Hb_032260_040 Hb_000201_050--Hb_001502_010 Hb_027746_030 Hb_027746_030 Hb_000201_050--Hb_027746_030 Hb_000201_050--Hb_000422_060 Hb_009851_120--Hb_000999_060 Hb_019299_010 Hb_019299_010 Hb_009851_120--Hb_019299_010 Hb_074100_010 Hb_074100_010 Hb_009851_120--Hb_074100_010 Hb_011930_090 Hb_011930_090 Hb_009851_120--Hb_011930_090 Hb_008200_010 Hb_008200_010 Hb_000007_020--Hb_008200_010 Hb_006590_040 Hb_006590_040 Hb_000007_020--Hb_006590_040 Hb_000007_020--Hb_001502_010 Hb_002116_020 Hb_002116_020 Hb_000007_020--Hb_002116_020 Hb_000007_020--Hb_000201_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.87309 1.9697 41.392 0 0.0723045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0445701 0 0 0.126587 2.59994

CAGE analysis