Hb_000999_060

Information

Type -
Description -
Location Contig999: 126435-126731
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11350g
description hypothetical protein
nr
ID XP_006372116.1
description hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9PAN2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s11350g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64911: 126386-126996
cDNA
(Sanger)
(ID:Location)		 013_O21.ab1: 126388-126996 , 032_O12.ab1: 126388-126996

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000999_060 0.0 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
2 Hb_002025_190 0.0635595866 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
3 Hb_009851_120 0.0671773833 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
4 Hb_074100_010 0.0758606038 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
5 Hb_029508_040 0.0911651304 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
6 Hb_187906_010 0.0918866502 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
7 Hb_000628_100 0.0944159313 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
8 Hb_000429_080 0.0968390249 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001584_250 0.1027346216 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
10 Hb_000025_150 0.1034020696 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
11 Hb_170597_010 0.1035688225 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
12 Hb_005695_050 0.1059839325 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
13 Hb_000027_010 0.1076942215 - - -
14 Hb_000186_090 0.1090417468 - - ACC oxidase 1 [Hevea brasiliensis]
15 Hb_003777_100 0.1121517162 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
16 Hb_019299_010 0.1125665855 - - zinc finger protein, putative [Ricinus communis]
17 Hb_000164_250 0.1145762917 - - hypothetical protein CISIN_1g040645mg [Citrus sinensis]
18 Hb_180293_010 0.1148683409 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
19 Hb_000438_180 0.1159482895 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
20 Hb_006452_080 0.1163394494 - - Nodulin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000999_060 Hb_000999_060 Hb_002025_190 Hb_002025_190 Hb_000999_060--Hb_002025_190 Hb_009851_120 Hb_009851_120 Hb_000999_060--Hb_009851_120 Hb_074100_010 Hb_074100_010 Hb_000999_060--Hb_074100_010 Hb_029508_040 Hb_029508_040 Hb_000999_060--Hb_029508_040 Hb_187906_010 Hb_187906_010 Hb_000999_060--Hb_187906_010 Hb_000628_100 Hb_000628_100 Hb_000999_060--Hb_000628_100 Hb_002025_190--Hb_000628_100 Hb_002025_190--Hb_074100_010 Hb_001269_440 Hb_001269_440 Hb_002025_190--Hb_001269_440 Hb_002025_190--Hb_009851_120 Hb_000027_010 Hb_000027_010 Hb_002025_190--Hb_000027_010 Hb_019299_010 Hb_019299_010 Hb_009851_120--Hb_019299_010 Hb_009851_120--Hb_074100_010 Hb_011930_090 Hb_011930_090 Hb_009851_120--Hb_011930_090 Hb_001584_250 Hb_001584_250 Hb_009851_120--Hb_001584_250 Hb_000429_080 Hb_000429_080 Hb_009851_120--Hb_000429_080 Hb_074100_010--Hb_029508_040 Hb_000186_090 Hb_000186_090 Hb_074100_010--Hb_000186_090 Hb_074100_010--Hb_001584_250 Hb_029508_040--Hb_000186_090 Hb_002277_020 Hb_002277_020 Hb_029508_040--Hb_002277_020 Hb_000710_130 Hb_000710_130 Hb_029508_040--Hb_000710_130 Hb_029508_040--Hb_002025_190 Hb_001401_110 Hb_001401_110 Hb_187906_010--Hb_001401_110 Hb_000438_180 Hb_000438_180 Hb_187906_010--Hb_000438_180 Hb_000087_160 Hb_000087_160 Hb_187906_010--Hb_000087_160 Hb_187906_010--Hb_019299_010 Hb_000959_170 Hb_000959_170 Hb_187906_010--Hb_000959_170 Hb_187906_010--Hb_009851_120 Hb_000164_250 Hb_000164_250 Hb_000628_100--Hb_000164_250 Hb_003777_100 Hb_003777_100 Hb_000628_100--Hb_003777_100 Hb_005695_050 Hb_005695_050 Hb_000628_100--Hb_005695_050 Hb_000628_100--Hb_009851_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.79871 3.28809 60.9711 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.39306

CAGE analysis