Hb_074100_010

Information

Type -
Description -
Location Contig74100: 6-332
Sequence    

Annotation

kegg
ID pop:POPTR_0017s06310g
description hypothetical protein
nr
ID KDP42826.1
description hypothetical protein JCGZ_23768 [Jatropha curcas]
swissprot
ID D7SFH9
description Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 OS=Arabidopsis thaliana GN=GDPDL2 PE=1 SV=1
trembl
ID A0A067L2Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23768 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074100_010 0.0 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
2 Hb_029508_040 0.0523093868 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
3 Hb_000999_060 0.0758606038 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
4 Hb_002025_190 0.0787924645 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
5 Hb_009851_120 0.0790592076 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
6 Hb_000186_090 0.0838253067 - - ACC oxidase 1 [Hevea brasiliensis]
7 Hb_001584_250 0.0995951846 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
8 Hb_000027_010 0.1001500158 - - -
9 Hb_005695_050 0.1075780854 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
10 Hb_000579_210 0.1086587764 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
11 Hb_000429_080 0.1104462243 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001269_440 0.1120058375 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
13 Hb_032299_020 0.1133094331 - - tonoplast intrinsic protein, putative [Ricinus communis]
14 Hb_103931_010 0.113406469 - - -
15 Hb_002277_020 0.1143925121 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
16 Hb_019299_010 0.1144767191 - - zinc finger protein, putative [Ricinus communis]
17 Hb_011930_090 0.1158988064 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
18 Hb_187906_010 0.1167255086 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
19 Hb_000628_100 0.1199238383 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
20 Hb_000025_150 0.1210233137 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]

Gene co-expression network

sample Hb_074100_010 Hb_074100_010 Hb_029508_040 Hb_029508_040 Hb_074100_010--Hb_029508_040 Hb_000999_060 Hb_000999_060 Hb_074100_010--Hb_000999_060 Hb_002025_190 Hb_002025_190 Hb_074100_010--Hb_002025_190 Hb_009851_120 Hb_009851_120 Hb_074100_010--Hb_009851_120 Hb_000186_090 Hb_000186_090 Hb_074100_010--Hb_000186_090 Hb_001584_250 Hb_001584_250 Hb_074100_010--Hb_001584_250 Hb_029508_040--Hb_000186_090 Hb_002277_020 Hb_002277_020 Hb_029508_040--Hb_002277_020 Hb_029508_040--Hb_000999_060 Hb_000710_130 Hb_000710_130 Hb_029508_040--Hb_000710_130 Hb_029508_040--Hb_002025_190 Hb_000999_060--Hb_002025_190 Hb_000999_060--Hb_009851_120 Hb_187906_010 Hb_187906_010 Hb_000999_060--Hb_187906_010 Hb_000628_100 Hb_000628_100 Hb_000999_060--Hb_000628_100 Hb_002025_190--Hb_000628_100 Hb_001269_440 Hb_001269_440 Hb_002025_190--Hb_001269_440 Hb_002025_190--Hb_009851_120 Hb_000027_010 Hb_000027_010 Hb_002025_190--Hb_000027_010 Hb_019299_010 Hb_019299_010 Hb_009851_120--Hb_019299_010 Hb_011930_090 Hb_011930_090 Hb_009851_120--Hb_011930_090 Hb_009851_120--Hb_001584_250 Hb_000429_080 Hb_000429_080 Hb_009851_120--Hb_000429_080 Hb_069384_010 Hb_069384_010 Hb_000186_090--Hb_069384_010 Hb_000186_090--Hb_000710_130 Hb_000186_090--Hb_002277_020 Hb_000188_140 Hb_000188_140 Hb_000186_090--Hb_000188_140 Hb_032299_020 Hb_032299_020 Hb_001584_250--Hb_032299_020 Hb_001584_250--Hb_000429_080 Hb_000438_180 Hb_000438_180 Hb_001584_250--Hb_000438_180 Hb_000201_050 Hb_000201_050 Hb_001584_250--Hb_000201_050 Hb_000007_020 Hb_000007_020 Hb_001584_250--Hb_000007_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.61697 1.09496 16.852 0 0.118992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.108682 0.386846

CAGE analysis