Hb_000438_180

Information

Type transcription factor
Description TF Family: LOB
Location Contig438: 145596-146358
Sequence    

Annotation

kegg
ID rcu:RCOM_0689060
description LOB domain-containing protein, putative
nr
ID XP_002520837.1
description LOB domain-containing protein, putative [Ricinus communis]
swissprot
ID Q8L5T5
description LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2
trembl
ID B9S4B8
description LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0689060 PE=4 SV=1
Gene Ontology
ID GO:0005634
description lob domain-containing protein 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42576: 145247-146010
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000438_180 0.0 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
2 Hb_001401_110 0.043688531 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
3 Hb_187906_010 0.0717527743 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
4 Hb_001269_430 0.0743119776 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
5 Hb_003711_050 0.0746863407 - - Isoflavone reductase, putative [Ricinus communis]
6 Hb_000025_150 0.0774602737 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
7 Hb_021443_010 0.0779406306 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
8 Hb_001584_250 0.0782668044 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
9 Hb_004807_070 0.0820975395 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
10 Hb_011930_090 0.082487106 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
11 Hb_032299_020 0.0848749242 - - tonoplast intrinsic protein, putative [Ricinus communis]
12 Hb_012217_010 0.0913149035 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
13 Hb_032260_040 0.0951790954 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000087_160 0.0961849685 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_019299_010 0.0965456295 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000422_060 0.099989595 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
17 Hb_009851_120 0.1043006626 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
18 Hb_001343_060 0.1048400259 - - Cytochrome P450 [Theobroma cacao]
19 Hb_001141_430 0.1061594667 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
20 Hb_024066_030 0.1063061776 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]

Gene co-expression network

sample Hb_000438_180 Hb_000438_180 Hb_001401_110 Hb_001401_110 Hb_000438_180--Hb_001401_110 Hb_187906_010 Hb_187906_010 Hb_000438_180--Hb_187906_010 Hb_001269_430 Hb_001269_430 Hb_000438_180--Hb_001269_430 Hb_003711_050 Hb_003711_050 Hb_000438_180--Hb_003711_050 Hb_000025_150 Hb_000025_150 Hb_000438_180--Hb_000025_150 Hb_021443_010 Hb_021443_010 Hb_000438_180--Hb_021443_010 Hb_004807_070 Hb_004807_070 Hb_001401_110--Hb_004807_070 Hb_001401_110--Hb_187906_010 Hb_001401_110--Hb_001269_430 Hb_001712_010 Hb_001712_010 Hb_001401_110--Hb_001712_010 Hb_092272_010 Hb_092272_010 Hb_001401_110--Hb_092272_010 Hb_000087_160 Hb_000087_160 Hb_187906_010--Hb_000087_160 Hb_019299_010 Hb_019299_010 Hb_187906_010--Hb_019299_010 Hb_000959_170 Hb_000959_170 Hb_187906_010--Hb_000959_170 Hb_009851_120 Hb_009851_120 Hb_187906_010--Hb_009851_120 Hb_001343_060 Hb_001343_060 Hb_001269_430--Hb_001343_060 Hb_001269_430--Hb_004807_070 Hb_011930_090 Hb_011930_090 Hb_001269_430--Hb_011930_090 Hb_011344_110 Hb_011344_110 Hb_001269_430--Hb_011344_110 Hb_003711_050--Hb_021443_010 Hb_032260_040 Hb_032260_040 Hb_003711_050--Hb_032260_040 Hb_000201_050 Hb_000201_050 Hb_003711_050--Hb_000201_050 Hb_001584_250 Hb_001584_250 Hb_003711_050--Hb_001584_250 Hb_000853_140 Hb_000853_140 Hb_003711_050--Hb_000853_140 Hb_180293_010 Hb_180293_010 Hb_000025_150--Hb_180293_010 Hb_000025_150--Hb_001401_110 Hb_000025_150--Hb_001584_250 Hb_000025_150--Hb_001269_430 Hb_000025_150--Hb_004807_070 Hb_021443_010--Hb_032260_040 Hb_021443_010--Hb_001584_250 Hb_021443_010--Hb_001401_110 Hb_021443_010--Hb_000201_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0384756 4.85535 1.29096 31.9042 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0285703 2.88142

CAGE analysis