Hb_000853_140

Information

Type -
Description -
Location Contig853: 91579-92535
Sequence    

Annotation

kegg
ID pop:POPTR_0014s12080g
description POPTRDRAFT_774756; hypothetical protein
nr
ID XP_002320995.1
description hypothetical protein POPTR_0014s12080g [Populus trichocarpa]
swissprot
ID Q9FE06
description Protein EXORDIUM-like 2 OS=Arabidopsis thaliana GN=EXL2 PE=2 SV=1
trembl
ID B9I9P0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s12080g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_140 0.0 - - hypothetical protein POPTR_0014s12080g [Populus trichocarpa]
2 Hb_008406_170 0.0684115118 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000953_110 0.0833521486 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
4 Hb_032260_040 0.0900172107 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004158_040 0.0936269362 - - PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
6 Hb_003711_050 0.0960629985 - - Isoflavone reductase, putative [Ricinus communis]
7 Hb_007545_220 0.0996408896 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
8 Hb_005588_050 0.1026270443 - - conserved hypothetical protein [Ricinus communis]
9 Hb_021443_010 0.1075306344 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
10 Hb_010217_020 0.1078052021 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
11 Hb_006618_100 0.1177874222 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
12 Hb_001722_110 0.1187567421 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
13 Hb_001269_430 0.1191475686 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
14 Hb_005183_070 0.1221687274 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
15 Hb_000349_280 0.1239497854 - - conserved hypothetical protein [Ricinus communis]
16 Hb_029665_010 0.1240452611 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
17 Hb_007441_100 0.1253762384 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
18 Hb_004529_010 0.1258452894 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
19 Hb_000438_180 0.1278944927 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
20 Hb_001541_170 0.1280861509 - - hypothetical protein JCGZ_17850 [Jatropha curcas]

Gene co-expression network

sample Hb_000853_140 Hb_000853_140 Hb_008406_170 Hb_008406_170 Hb_000853_140--Hb_008406_170 Hb_000953_110 Hb_000953_110 Hb_000853_140--Hb_000953_110 Hb_032260_040 Hb_032260_040 Hb_000853_140--Hb_032260_040 Hb_004158_040 Hb_004158_040 Hb_000853_140--Hb_004158_040 Hb_003711_050 Hb_003711_050 Hb_000853_140--Hb_003711_050 Hb_007545_220 Hb_007545_220 Hb_000853_140--Hb_007545_220 Hb_008406_170--Hb_032260_040 Hb_001269_430 Hb_001269_430 Hb_008406_170--Hb_001269_430 Hb_002835_120 Hb_002835_120 Hb_008406_170--Hb_002835_120 Hb_012217_010 Hb_012217_010 Hb_008406_170--Hb_012217_010 Hb_008406_170--Hb_003711_050 Hb_000953_110--Hb_007545_220 Hb_010217_020 Hb_010217_020 Hb_000953_110--Hb_010217_020 Hb_000197_260 Hb_000197_260 Hb_000953_110--Hb_000197_260 Hb_000953_110--Hb_004158_040 Hb_005183_070 Hb_005183_070 Hb_000953_110--Hb_005183_070 Hb_032260_040--Hb_003711_050 Hb_032260_040--Hb_012217_010 Hb_000201_050 Hb_000201_050 Hb_032260_040--Hb_000201_050 Hb_021443_010 Hb_021443_010 Hb_032260_040--Hb_021443_010 Hb_001579_160 Hb_001579_160 Hb_004158_040--Hb_001579_160 Hb_001722_110 Hb_001722_110 Hb_004158_040--Hb_001722_110 Hb_005588_050 Hb_005588_050 Hb_004158_040--Hb_005588_050 Hb_001454_350 Hb_001454_350 Hb_004158_040--Hb_001454_350 Hb_004158_040--Hb_010217_020 Hb_006618_100 Hb_006618_100 Hb_004158_040--Hb_006618_100 Hb_003711_050--Hb_021443_010 Hb_000438_180 Hb_000438_180 Hb_003711_050--Hb_000438_180 Hb_003711_050--Hb_000201_050 Hb_001584_250 Hb_001584_250 Hb_003711_050--Hb_001584_250 Hb_007545_220--Hb_000197_260 Hb_000599_160 Hb_000599_160 Hb_007545_220--Hb_000599_160 Hb_007545_220--Hb_005588_050 Hb_007545_220--Hb_004158_040 Hb_007545_220--Hb_010217_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.146166 7.65778 0.986385 43.3822 0.0437962 0.177806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0421101 0 0.0508593 9.27362

CAGE analysis