Hb_000953_110

Information

Type transcription factor
Description TF Family: C2H2
Location Contig953: 124830-125741
Sequence    

Annotation

kegg
ID rcu:RCOM_0383560
description hypothetical protein
nr
ID XP_012066440.1
description PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L2J2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23621 PE=4 SV=1
Gene Ontology
ID GO:0005622
description PREDICTED: uncharacterized protein LOC105629453

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000953_110 0.0 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
2 Hb_007545_220 0.0526341588 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
3 Hb_010217_020 0.0742537663 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
4 Hb_000853_140 0.0833521486 - - hypothetical protein POPTR_0014s12080g [Populus trichocarpa]
5 Hb_000197_260 0.0929040646 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
6 Hb_004158_040 0.0943427955 - - PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
7 Hb_005183_070 0.1016447182 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
8 Hb_005588_050 0.1043500907 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001680_050 0.1063113105 - - -
10 Hb_029665_010 0.1095251682 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
11 Hb_180980_010 0.1096669507 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
12 Hb_061783_010 0.1134294686 - - PREDICTED: uncharacterized protein LOC105124983 isoform X4 [Populus euphratica]
13 Hb_000599_160 0.1145090568 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
14 Hb_003711_050 0.1173648311 - - Isoflavone reductase, putative [Ricinus communis]
15 Hb_006618_100 0.1178714341 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
16 Hb_001722_110 0.1208810639 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
17 Hb_007579_030 0.1212565413 - - receptor protein kinase, putative [Ricinus communis]
18 Hb_003582_030 0.1215478018 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
19 Hb_000349_280 0.121781839 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004450_090 0.1219439207 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000953_110 Hb_000953_110 Hb_007545_220 Hb_007545_220 Hb_000953_110--Hb_007545_220 Hb_010217_020 Hb_010217_020 Hb_000953_110--Hb_010217_020 Hb_000853_140 Hb_000853_140 Hb_000953_110--Hb_000853_140 Hb_000197_260 Hb_000197_260 Hb_000953_110--Hb_000197_260 Hb_004158_040 Hb_004158_040 Hb_000953_110--Hb_004158_040 Hb_005183_070 Hb_005183_070 Hb_000953_110--Hb_005183_070 Hb_007545_220--Hb_000197_260 Hb_000599_160 Hb_000599_160 Hb_007545_220--Hb_000599_160 Hb_005588_050 Hb_005588_050 Hb_007545_220--Hb_005588_050 Hb_007545_220--Hb_004158_040 Hb_007545_220--Hb_010217_020 Hb_006618_100 Hb_006618_100 Hb_010217_020--Hb_006618_100 Hb_010217_020--Hb_004158_040 Hb_001454_350 Hb_001454_350 Hb_010217_020--Hb_001454_350 Hb_000349_280 Hb_000349_280 Hb_010217_020--Hb_000349_280 Hb_008406_170 Hb_008406_170 Hb_000853_140--Hb_008406_170 Hb_032260_040 Hb_032260_040 Hb_000853_140--Hb_032260_040 Hb_000853_140--Hb_004158_040 Hb_003711_050 Hb_003711_050 Hb_000853_140--Hb_003711_050 Hb_000853_140--Hb_007545_220 Hb_000197_260--Hb_005183_070 Hb_152914_010 Hb_152914_010 Hb_000197_260--Hb_152914_010 Hb_029665_010 Hb_029665_010 Hb_000197_260--Hb_029665_010 Hb_001680_050 Hb_001680_050 Hb_000197_260--Hb_001680_050 Hb_002186_110 Hb_002186_110 Hb_000197_260--Hb_002186_110 Hb_007579_030 Hb_007579_030 Hb_000197_260--Hb_007579_030 Hb_001579_160 Hb_001579_160 Hb_004158_040--Hb_001579_160 Hb_001722_110 Hb_001722_110 Hb_004158_040--Hb_001722_110 Hb_004158_040--Hb_005588_050 Hb_004158_040--Hb_001454_350 Hb_004158_040--Hb_006618_100 Hb_000368_040 Hb_000368_040 Hb_005183_070--Hb_000368_040 Hb_005183_070--Hb_005588_050 Hb_005183_070--Hb_029665_010 Hb_000317_170 Hb_000317_170 Hb_005183_070--Hb_000317_170 Hb_005183_070--Hb_001680_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0248072 3.92657 0.685369 17.2914 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.162384 4.6369

CAGE analysis