Hb_008406_170

Information

Type -
Description -
Location Contig8406: 115868-117100
Sequence    

Annotation

kegg
ID rcu:RCOM_1173520
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002517887.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9LJ64
description Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=1
trembl
ID B9RVW8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1173520 PE=4 SV=1
Gene Ontology
ID GO:0016301
description leucine-rich repeat extensin-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60127: 116510-117177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008406_170 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000853_140 0.0684115118 - - hypothetical protein POPTR_0014s12080g [Populus trichocarpa]
3 Hb_032260_040 0.0832947157 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001269_430 0.0930181589 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
5 Hb_002835_120 0.1127152729 - - PREDICTED: uncharacterized protein LOC105640304 [Jatropha curcas]
6 Hb_012217_010 0.1160715358 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
7 Hb_003711_050 0.1180953487 - - Isoflavone reductase, putative [Ricinus communis]
8 Hb_005588_050 0.1204102067 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004158_040 0.1204830572 - - PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
10 Hb_000349_280 0.120958254 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006618_100 0.1212841978 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
12 Hb_021443_010 0.1218506757 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
13 Hb_145975_010 0.1221990074 - - cytochrome P450, putative [Ricinus communis]
14 Hb_000580_210 0.1245434726 - - PREDICTED: cysteine-rich repeat secretory protein 15 [Jatropha curcas]
15 Hb_007441_100 0.1246262975 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
16 Hb_000438_180 0.1279668277 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
17 Hb_011930_090 0.1297091218 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
18 Hb_010217_020 0.1326004107 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
19 Hb_001401_110 0.1327761428 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
20 Hb_001343_060 0.1332363518 - - Cytochrome P450 [Theobroma cacao]

Gene co-expression network

sample Hb_008406_170 Hb_008406_170 Hb_000853_140 Hb_000853_140 Hb_008406_170--Hb_000853_140 Hb_032260_040 Hb_032260_040 Hb_008406_170--Hb_032260_040 Hb_001269_430 Hb_001269_430 Hb_008406_170--Hb_001269_430 Hb_002835_120 Hb_002835_120 Hb_008406_170--Hb_002835_120 Hb_012217_010 Hb_012217_010 Hb_008406_170--Hb_012217_010 Hb_003711_050 Hb_003711_050 Hb_008406_170--Hb_003711_050 Hb_000953_110 Hb_000953_110 Hb_000853_140--Hb_000953_110 Hb_000853_140--Hb_032260_040 Hb_004158_040 Hb_004158_040 Hb_000853_140--Hb_004158_040 Hb_000853_140--Hb_003711_050 Hb_007545_220 Hb_007545_220 Hb_000853_140--Hb_007545_220 Hb_032260_040--Hb_003711_050 Hb_032260_040--Hb_012217_010 Hb_000201_050 Hb_000201_050 Hb_032260_040--Hb_000201_050 Hb_021443_010 Hb_021443_010 Hb_032260_040--Hb_021443_010 Hb_001343_060 Hb_001343_060 Hb_001269_430--Hb_001343_060 Hb_004807_070 Hb_004807_070 Hb_001269_430--Hb_004807_070 Hb_001401_110 Hb_001401_110 Hb_001269_430--Hb_001401_110 Hb_000438_180 Hb_000438_180 Hb_001269_430--Hb_000438_180 Hb_011930_090 Hb_011930_090 Hb_001269_430--Hb_011930_090 Hb_011344_110 Hb_011344_110 Hb_001269_430--Hb_011344_110 Hb_005736_110 Hb_005736_110 Hb_002835_120--Hb_005736_110 Hb_001141_010 Hb_001141_010 Hb_002835_120--Hb_001141_010 Hb_002837_150 Hb_002837_150 Hb_002835_120--Hb_002837_150 Hb_000638_110 Hb_000638_110 Hb_002835_120--Hb_000638_110 Hb_145975_010 Hb_145975_010 Hb_002835_120--Hb_145975_010 Hb_000349_280 Hb_000349_280 Hb_002835_120--Hb_000349_280 Hb_012217_010--Hb_011930_090 Hb_007441_100 Hb_007441_100 Hb_012217_010--Hb_007441_100 Hb_000847_110 Hb_000847_110 Hb_012217_010--Hb_000847_110 Hb_001541_170 Hb_001541_170 Hb_012217_010--Hb_001541_170 Hb_019299_010 Hb_019299_010 Hb_012217_010--Hb_019299_010 Hb_003711_050--Hb_021443_010 Hb_003711_050--Hb_000438_180 Hb_003711_050--Hb_000201_050 Hb_001584_250 Hb_001584_250 Hb_003711_050--Hb_001584_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.206179 6.1507 0.435811 40.6283 0.246268 0.212345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.039278 0.0617947 0 0.0989681 6.53197

CAGE analysis