Hb_000638_110

Information

Type transcription factor
Description TF Family: NAC
Location Contig638: 104783-105807
Sequence    

Annotation

kegg
ID pop:POPTR_0007s04250g
description POPTRDRAFT_802659; hypothetical protein
nr
ID XP_002310519.1
description hypothetical protein POPTR_0007s04250g [Populus trichocarpa]
swissprot
ID A0SPJ8
description NAC transcription factor NAM-1 OS=Hordeum vulgare var. distichum GN=NAM-1 PE=3 SV=1
trembl
ID B9HES9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s04250g PE=4 SV=1
Gene Ontology
ID GO:0050794
description nac domain-containing protein 68

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52014: 104818-105944
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_110 0.0 transcription factor TF Family: NAC hypothetical protein POPTR_0007s04250g [Populus trichocarpa]
2 Hb_001141_010 0.0891668716 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
3 Hb_103632_010 0.0897212535 - - triacylglycerol lipase, putative [Ricinus communis]
4 Hb_002835_120 0.1018620853 - - PREDICTED: uncharacterized protein LOC105640304 [Jatropha curcas]
5 Hb_004757_040 0.1025431988 - - -
6 Hb_002837_150 0.1028085975 - - hypothetical protein EUGRSUZ_L00324 [Eucalyptus grandis]
7 Hb_001322_010 0.1111260006 - - PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
8 Hb_000705_070 0.1174619501 - - conserved hypothetical protein [Ricinus communis]
9 Hb_022597_010 0.121757159 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
10 Hb_156850_040 0.1262043964 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
11 Hb_000245_070 0.129457156 - - PREDICTED: uncharacterized protein LOC105141276 [Populus euphratica]
12 Hb_001255_030 0.1305841272 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840, partial [Sesamum indicum]
13 Hb_005736_110 0.131938024 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
14 Hb_000860_030 0.1350246106 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001269_440 0.1357092052 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
16 Hb_000007_020 0.1367800877 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
17 Hb_004617_010 0.1390467205 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]
18 Hb_003582_010 0.1411077585 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
19 Hb_000349_280 0.1444511226 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001013_070 0.1486035501 - - -

Gene co-expression network

sample Hb_000638_110 Hb_000638_110 Hb_001141_010 Hb_001141_010 Hb_000638_110--Hb_001141_010 Hb_103632_010 Hb_103632_010 Hb_000638_110--Hb_103632_010 Hb_002835_120 Hb_002835_120 Hb_000638_110--Hb_002835_120 Hb_004757_040 Hb_004757_040 Hb_000638_110--Hb_004757_040 Hb_002837_150 Hb_002837_150 Hb_000638_110--Hb_002837_150 Hb_001322_010 Hb_001322_010 Hb_000638_110--Hb_001322_010 Hb_001141_010--Hb_002837_150 Hb_001141_010--Hb_103632_010 Hb_001141_010--Hb_002835_120 Hb_001141_010--Hb_004757_040 Hb_001269_440 Hb_001269_440 Hb_001141_010--Hb_001269_440 Hb_103632_010--Hb_002837_150 Hb_001255_030 Hb_001255_030 Hb_103632_010--Hb_001255_030 Hb_103632_010--Hb_004757_040 Hb_000007_020 Hb_000007_020 Hb_103632_010--Hb_000007_020 Hb_005736_110 Hb_005736_110 Hb_002835_120--Hb_005736_110 Hb_002835_120--Hb_002837_150 Hb_145975_010 Hb_145975_010 Hb_002835_120--Hb_145975_010 Hb_000349_280 Hb_000349_280 Hb_002835_120--Hb_000349_280 Hb_004757_040--Hb_001255_030 Hb_000245_070 Hb_000245_070 Hb_004757_040--Hb_000245_070 Hb_004757_040--Hb_002837_150 Hb_002837_150--Hb_001269_440 Hb_003212_030 Hb_003212_030 Hb_002837_150--Hb_003212_030 Hb_004617_010 Hb_004617_010 Hb_002837_150--Hb_004617_010 Hb_022597_010 Hb_022597_010 Hb_001322_010--Hb_022597_010 Hb_000860_030 Hb_000860_030 Hb_001322_010--Hb_000860_030 Hb_000705_070 Hb_000705_070 Hb_001322_010--Hb_000705_070 Hb_156850_040 Hb_156850_040 Hb_001322_010--Hb_156850_040 Hb_000740_080 Hb_000740_080 Hb_001322_010--Hb_000740_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.250553 13.3943 0.890995 54.9456 0.119611 0.188838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0721536 0 0.408521 2.69144 3.28538

CAGE analysis