Hb_001255_030

Information

Type -
Description -
Location Contig1255: 18793-23947
Sequence    

Annotation

kegg
ID mdm:103405239
description probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840
nr
ID XP_011102070.1
description PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840, partial [Sesamum indicum]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID U5FF39
description Putative receptor-like protein kinase RLPK1 OS=Populus trichocarpa GN=POPTR_0019s01890g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07820: 23083-25090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001255_030 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840, partial [Sesamum indicum]
2 Hb_103632_010 0.0900224724 - - triacylglycerol lipase, putative [Ricinus communis]
3 Hb_027402_110 0.0931746745 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
4 Hb_004757_040 0.1059765778 - - -
5 Hb_002837_150 0.1138124695 - - hypothetical protein EUGRSUZ_L00324 [Eucalyptus grandis]
6 Hb_001675_260 0.1191935081 - - nitrate transporter, putative [Ricinus communis]
7 Hb_000860_030 0.1195926954 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001502_010 0.121604109 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
9 Hb_001584_250 0.1228203202 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
10 Hb_000007_020 0.1245866515 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
11 Hb_074100_010 0.1247389998 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
12 Hb_032299_020 0.1248537857 - - tonoplast intrinsic protein, putative [Ricinus communis]
13 Hb_002025_190 0.1268957074 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
14 Hb_005695_050 0.1294045209 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
15 Hb_008200_010 0.1294778789 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
16 Hb_029508_040 0.1303812311 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
17 Hb_000422_060 0.1304212011 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
18 Hb_000638_110 0.1305841272 transcription factor TF Family: NAC hypothetical protein POPTR_0007s04250g [Populus trichocarpa]
19 Hb_000705_070 0.1351277935 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004157_060 0.1353221927 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Jatropha curcas]

Gene co-expression network

sample Hb_001255_030 Hb_001255_030 Hb_103632_010 Hb_103632_010 Hb_001255_030--Hb_103632_010 Hb_027402_110 Hb_027402_110 Hb_001255_030--Hb_027402_110 Hb_004757_040 Hb_004757_040 Hb_001255_030--Hb_004757_040 Hb_002837_150 Hb_002837_150 Hb_001255_030--Hb_002837_150 Hb_001675_260 Hb_001675_260 Hb_001255_030--Hb_001675_260 Hb_000860_030 Hb_000860_030 Hb_001255_030--Hb_000860_030 Hb_103632_010--Hb_002837_150 Hb_001141_010 Hb_001141_010 Hb_103632_010--Hb_001141_010 Hb_000638_110 Hb_000638_110 Hb_103632_010--Hb_000638_110 Hb_103632_010--Hb_004757_040 Hb_000007_020 Hb_000007_020 Hb_103632_010--Hb_000007_020 Hb_001766_140 Hb_001766_140 Hb_027402_110--Hb_001766_140 Hb_027402_110--Hb_001675_260 Hb_008200_010 Hb_008200_010 Hb_027402_110--Hb_008200_010 Hb_001502_010 Hb_001502_010 Hb_027402_110--Hb_001502_010 Hb_005695_050 Hb_005695_050 Hb_027402_110--Hb_005695_050 Hb_004757_040--Hb_000638_110 Hb_004757_040--Hb_001141_010 Hb_000245_070 Hb_000245_070 Hb_004757_040--Hb_000245_070 Hb_004757_040--Hb_002837_150 Hb_002837_150--Hb_001141_010 Hb_001269_440 Hb_001269_440 Hb_002837_150--Hb_001269_440 Hb_003212_030 Hb_003212_030 Hb_002837_150--Hb_003212_030 Hb_004617_010 Hb_004617_010 Hb_002837_150--Hb_004617_010 Hb_002835_120 Hb_002835_120 Hb_002837_150--Hb_002835_120 Hb_003529_010 Hb_003529_010 Hb_001675_260--Hb_003529_010 Hb_001318_180 Hb_001318_180 Hb_001675_260--Hb_001318_180 Hb_004007_190 Hb_004007_190 Hb_001675_260--Hb_004007_190 Hb_004157_060 Hb_004157_060 Hb_001675_260--Hb_004157_060 Hb_000604_050 Hb_000604_050 Hb_001675_260--Hb_000604_050 Hb_001322_010 Hb_001322_010 Hb_000860_030--Hb_001322_010 Hb_000705_070 Hb_000705_070 Hb_000860_030--Hb_000705_070 Hb_022597_010 Hb_022597_010 Hb_000860_030--Hb_022597_010 Hb_156850_040 Hb_156850_040 Hb_000860_030--Hb_156850_040 Hb_000172_150 Hb_000172_150 Hb_000860_030--Hb_000172_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.17806 0.28902 4.58097 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.183898 0.145845

CAGE analysis