Hb_001318_180

Information

Type -
Description -
Location Contig1318: 149646-149978
Sequence    

Annotation

kegg
ID rcu:RCOM_1345340
description hypothetical protein
nr
ID XP_012082963.1
description PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]
swissprot
ID Q9FNZ5
description Protein NIM1-INTERACTING 1 OS=Arabidopsis thaliana GN=NIMIN-1 PE=1 SV=1
trembl
ID A0A067JZV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14079 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09220: 149584-150092
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_180 0.0 - - PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]
2 Hb_004007_190 0.0645628325 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
3 Hb_001675_260 0.0736685326 - - nitrate transporter, putative [Ricinus communis]
4 Hb_003529_010 0.0859173286 - - PREDICTED: disease resistance protein RPS6-like [Jatropha curcas]
5 Hb_000021_010 0.0919779325 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003906_150 0.0965173604 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
7 Hb_027402_110 0.102386945 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
8 Hb_004157_060 0.1107726787 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Jatropha curcas]
9 Hb_000604_050 0.1143047534 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
10 Hb_003012_010 0.12445366 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002025_120 0.1258960515 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
12 Hb_006890_050 0.1266128967 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
13 Hb_002639_120 0.1272656779 - - unnamed protein product [Vitis vinifera]
14 Hb_002422_010 0.1298662143 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
15 Hb_008566_070 0.1307742512 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005054_010 0.1313410173 - - amino acid transporter, putative [Ricinus communis]
17 Hb_004125_080 0.1388282323 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
18 Hb_123887_010 0.1414278713 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
19 Hb_168031_010 0.1417914731 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6 [Jatropha curcas]
20 Hb_002116_020 0.1421394543 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]

Gene co-expression network

sample Hb_001318_180 Hb_001318_180 Hb_004007_190 Hb_004007_190 Hb_001318_180--Hb_004007_190 Hb_001675_260 Hb_001675_260 Hb_001318_180--Hb_001675_260 Hb_003529_010 Hb_003529_010 Hb_001318_180--Hb_003529_010 Hb_000021_010 Hb_000021_010 Hb_001318_180--Hb_000021_010 Hb_003906_150 Hb_003906_150 Hb_001318_180--Hb_003906_150 Hb_027402_110 Hb_027402_110 Hb_001318_180--Hb_027402_110 Hb_002025_120 Hb_002025_120 Hb_004007_190--Hb_002025_120 Hb_004007_190--Hb_003529_010 Hb_004007_190--Hb_001675_260 Hb_004007_190--Hb_000021_010 Hb_000604_050 Hb_000604_050 Hb_004007_190--Hb_000604_050 Hb_001675_260--Hb_003529_010 Hb_001675_260--Hb_027402_110 Hb_004157_060 Hb_004157_060 Hb_001675_260--Hb_004157_060 Hb_001675_260--Hb_000604_050 Hb_003529_010--Hb_000021_010 Hb_003529_010--Hb_000604_050 Hb_002783_210 Hb_002783_210 Hb_003529_010--Hb_002783_210 Hb_000021_010--Hb_004157_060 Hb_000021_010--Hb_001675_260 Hb_000021_010--Hb_003906_150 Hb_003906_150--Hb_000604_050 Hb_008566_070 Hb_008566_070 Hb_003906_150--Hb_008566_070 Hb_111985_090 Hb_111985_090 Hb_003906_150--Hb_111985_090 Hb_003906_150--Hb_004007_190 Hb_000983_110 Hb_000983_110 Hb_003906_150--Hb_000983_110 Hb_001766_140 Hb_001766_140 Hb_027402_110--Hb_001766_140 Hb_008200_010 Hb_008200_010 Hb_027402_110--Hb_008200_010 Hb_001502_010 Hb_001502_010 Hb_027402_110--Hb_001502_010 Hb_001255_030 Hb_001255_030 Hb_027402_110--Hb_001255_030 Hb_005695_050 Hb_005695_050 Hb_027402_110--Hb_005695_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 20.3448 3.39624 35.8874 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.229419 0 1.13934 1.12305

CAGE analysis