Hb_003906_150

Information

Type -
Description -
Location Contig3906: 77040-77378
Sequence    

Annotation

kegg
ID pop:POPTR_0015s13730g
description POPTRDRAFT_575761; peptidoglycan-binding LysM domain-containing family protein
nr
ID XP_002321883.2
description peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9ID24
description Peptidoglycan-binding LysM domain-containing family protein (Fragment) OS=Populus trichocarpa GN=POPTR_0015s13730g PE=4 SV=2
Gene Ontology
ID GO:0009627
description peptidoglycan-binding domain-containing family partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39164: 77274-77464
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003906_150 0.0 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
2 Hb_000604_050 0.0898171352 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
3 Hb_001318_180 0.0965173604 - - PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]
4 Hb_008566_070 0.1087756714 - - conserved hypothetical protein [Ricinus communis]
5 Hb_111985_090 0.111151905 - - hypothetical protein RCOM_1595950 [Ricinus communis]
6 Hb_004007_190 0.1113958681 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
7 Hb_000983_110 0.120592867 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
8 Hb_001675_260 0.1289131351 - - nitrate transporter, putative [Ricinus communis]
9 Hb_003529_010 0.1306250367 - - PREDICTED: disease resistance protein RPS6-like [Jatropha curcas]
10 Hb_005054_010 0.1315711833 - - amino acid transporter, putative [Ricinus communis]
11 Hb_000021_010 0.1322110528 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005643_080 0.133131651 - - hypothetical protein POPTR_0001s12740g [Populus trichocarpa]
13 Hb_027402_110 0.1400975452 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
14 Hb_006590_040 0.1428124346 - - amino acid permease, putative [Ricinus communis]
15 Hb_002116_020 0.1433103139 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
16 Hb_008200_010 0.1436712983 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
17 Hb_168031_010 0.1460514866 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6 [Jatropha curcas]
18 Hb_001195_650 0.1470666061 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
19 Hb_004157_060 0.1472900849 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Jatropha curcas]
20 Hb_005687_060 0.1476652163 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003906_150 Hb_003906_150 Hb_000604_050 Hb_000604_050 Hb_003906_150--Hb_000604_050 Hb_001318_180 Hb_001318_180 Hb_003906_150--Hb_001318_180 Hb_008566_070 Hb_008566_070 Hb_003906_150--Hb_008566_070 Hb_111985_090 Hb_111985_090 Hb_003906_150--Hb_111985_090 Hb_004007_190 Hb_004007_190 Hb_003906_150--Hb_004007_190 Hb_000983_110 Hb_000983_110 Hb_003906_150--Hb_000983_110 Hb_000270_530 Hb_000270_530 Hb_000604_050--Hb_000270_530 Hb_003529_010 Hb_003529_010 Hb_000604_050--Hb_003529_010 Hb_000604_050--Hb_004007_190 Hb_103149_010 Hb_103149_010 Hb_000604_050--Hb_103149_010 Hb_000604_050--Hb_008566_070 Hb_001318_180--Hb_004007_190 Hb_001675_260 Hb_001675_260 Hb_001318_180--Hb_001675_260 Hb_001318_180--Hb_003529_010 Hb_000021_010 Hb_000021_010 Hb_001318_180--Hb_000021_010 Hb_027402_110 Hb_027402_110 Hb_001318_180--Hb_027402_110 Hb_008566_070--Hb_111985_090 Hb_008200_010 Hb_008200_010 Hb_008566_070--Hb_008200_010 Hb_005643_080 Hb_005643_080 Hb_008566_070--Hb_005643_080 Hb_001502_010 Hb_001502_010 Hb_008566_070--Hb_001502_010 Hb_000227_350 Hb_000227_350 Hb_008566_070--Hb_000227_350 Hb_006590_040 Hb_006590_040 Hb_111985_090--Hb_006590_040 Hb_005054_010 Hb_005054_010 Hb_111985_090--Hb_005054_010 Hb_002116_020 Hb_002116_020 Hb_111985_090--Hb_002116_020 Hb_111985_090--Hb_005643_080 Hb_002025_120 Hb_002025_120 Hb_004007_190--Hb_002025_120 Hb_004007_190--Hb_003529_010 Hb_004007_190--Hb_001675_260 Hb_004007_190--Hb_000021_010 Hb_000983_110--Hb_000604_050 Hb_001195_650 Hb_001195_650 Hb_000983_110--Hb_001195_650 Hb_010267_030 Hb_010267_030 Hb_000983_110--Hb_010267_030 Hb_000714_070 Hb_000714_070 Hb_000983_110--Hb_000714_070 Hb_000120_600 Hb_000120_600 Hb_000983_110--Hb_000120_600
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.391969 57.4211 7.59605 97.5428 0.111208 0.645551
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.28033 1.32226 0.66407 1.97692 5.80216

CAGE analysis