Hb_006590_040

Information

Type -
Description -
Location Contig6590: 40241-42535
Sequence    

Annotation

kegg
ID rcu:RCOM_0852710
description amino acid permease, putative
nr
ID XP_002517413.1
description amino acid permease, putative [Ricinus communis]
swissprot
ID Q9LFR1
description Protein NRT1/ PTR FAMILY 5.8 OS=Arabidopsis thaliana GN=NPF5.8 PE=2 SV=1
trembl
ID B9RUG8
description Amino acid permease, putative OS=Ricinus communis GN=RCOM_0852710 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52905: 42071-42519
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006590_040 0.0 - - amino acid permease, putative [Ricinus communis]
2 Hb_002116_020 0.0330591455 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
3 Hb_004125_080 0.0596814832 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
4 Hb_168031_010 0.064094155 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6 [Jatropha curcas]
5 Hb_008200_010 0.0649249713 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
6 Hb_002411_070 0.0683105704 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
7 Hb_002374_070 0.0699558338 - - amino acid transporter, putative [Ricinus communis]
8 Hb_000007_020 0.0826309661 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
9 Hb_000373_110 0.088606069 - - Nodulin, putative [Ricinus communis]
10 Hb_005054_010 0.0974373769 - - amino acid transporter, putative [Ricinus communis]
11 Hb_023536_020 0.0989623079 - - Nicotianamine synthase, putative [Ricinus communis]
12 Hb_001502_010 0.1117234605 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
13 Hb_111985_090 0.1118095311 - - hypothetical protein RCOM_1595950 [Ricinus communis]
14 Hb_005695_050 0.1130744929 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
15 Hb_027402_110 0.1142996138 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
16 Hb_008566_070 0.1178695581 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000245_070 0.1215546251 - - PREDICTED: uncharacterized protein LOC105141276 [Populus euphratica]
18 Hb_000433_060 0.1222784401 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
19 Hb_174644_010 0.1289890378 - - -
20 Hb_004757_040 0.1383668615 - - -

Gene co-expression network

sample Hb_006590_040 Hb_006590_040 Hb_002116_020 Hb_002116_020 Hb_006590_040--Hb_002116_020 Hb_004125_080 Hb_004125_080 Hb_006590_040--Hb_004125_080 Hb_168031_010 Hb_168031_010 Hb_006590_040--Hb_168031_010 Hb_008200_010 Hb_008200_010 Hb_006590_040--Hb_008200_010 Hb_002411_070 Hb_002411_070 Hb_006590_040--Hb_002411_070 Hb_002374_070 Hb_002374_070 Hb_006590_040--Hb_002374_070 Hb_002116_020--Hb_168031_010 Hb_002116_020--Hb_004125_080 Hb_005054_010 Hb_005054_010 Hb_002116_020--Hb_005054_010 Hb_002116_020--Hb_002411_070 Hb_000373_110 Hb_000373_110 Hb_002116_020--Hb_000373_110 Hb_004125_080--Hb_002374_070 Hb_004125_080--Hb_002411_070 Hb_004125_080--Hb_008200_010 Hb_004125_080--Hb_000373_110 Hb_168031_010--Hb_000373_110 Hb_168031_010--Hb_002411_070 Hb_168031_010--Hb_005054_010 Hb_168031_010--Hb_004125_080 Hb_001502_010 Hb_001502_010 Hb_008200_010--Hb_001502_010 Hb_008200_010--Hb_002374_070 Hb_005695_050 Hb_005695_050 Hb_008200_010--Hb_005695_050 Hb_027402_110 Hb_027402_110 Hb_008200_010--Hb_027402_110 Hb_000007_020 Hb_000007_020 Hb_008200_010--Hb_000007_020 Hb_002411_070--Hb_000373_110 Hb_023536_020 Hb_023536_020 Hb_002411_070--Hb_023536_020 Hb_002411_070--Hb_002374_070 Hb_002374_070--Hb_023536_020 Hb_002374_070--Hb_002116_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0292099 15.5122 0.846798 36.6379 0.0365903 0.0570849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.102391 1.41823

CAGE analysis