Hb_000373_110

Information

Type -
Description -
Location Contig373: 152286-152960
Sequence    

Annotation

kegg
ID rcu:RCOM_0490090
description Nodulin, putative
nr
ID XP_002530510.1
description Nodulin, putative [Ricinus communis]
swissprot
ID Q9M2C0
description Vacuolar iron transporter homolog 4 OS=Arabidopsis thaliana GN=At3g43660 PE=2 SV=1
trembl
ID B9SWZ1
description Nodulin, putative OS=Ricinus communis GN=RCOM_0490090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_110 0.0 - - Nodulin, putative [Ricinus communis]
2 Hb_002411_070 0.0650939409 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
3 Hb_168031_010 0.0703822593 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6 [Jatropha curcas]
4 Hb_023536_020 0.0720643536 - - Nicotianamine synthase, putative [Ricinus communis]
5 Hb_004125_080 0.0833966575 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
6 Hb_002116_020 0.0836830841 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
7 Hb_000433_060 0.0839055809 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
8 Hb_006590_040 0.088606069 - - amino acid permease, putative [Ricinus communis]
9 Hb_005054_010 0.0956938936 - - amino acid transporter, putative [Ricinus communis]
10 Hb_001808_010 0.097394085 - - PREDICTED: dirigent protein 23-like [Jatropha curcas]
11 Hb_002374_070 0.0996184771 - - amino acid transporter, putative [Ricinus communis]
12 Hb_174644_010 0.10885134 - - -
13 Hb_000115_260 0.1145622653 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH75 [Vitis vinifera]
14 Hb_005511_070 0.1146280136 - - -
15 Hb_005306_200 0.1149300681 - - -
16 Hb_000903_050 0.115200522 - - hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]
17 Hb_000259_100 0.1158876629 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
18 Hb_014214_010 0.1164000441 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
19 Hb_031022_040 0.120661972 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
20 Hb_008200_010 0.1260601921 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000373_110 Hb_000373_110 Hb_002411_070 Hb_002411_070 Hb_000373_110--Hb_002411_070 Hb_168031_010 Hb_168031_010 Hb_000373_110--Hb_168031_010 Hb_023536_020 Hb_023536_020 Hb_000373_110--Hb_023536_020 Hb_004125_080 Hb_004125_080 Hb_000373_110--Hb_004125_080 Hb_002116_020 Hb_002116_020 Hb_000373_110--Hb_002116_020 Hb_000433_060 Hb_000433_060 Hb_000373_110--Hb_000433_060 Hb_002411_070--Hb_004125_080 Hb_002411_070--Hb_023536_020 Hb_006590_040 Hb_006590_040 Hb_002411_070--Hb_006590_040 Hb_002374_070 Hb_002374_070 Hb_002411_070--Hb_002374_070 Hb_002411_070--Hb_002116_020 Hb_168031_010--Hb_002116_020 Hb_168031_010--Hb_006590_040 Hb_168031_010--Hb_002411_070 Hb_005054_010 Hb_005054_010 Hb_168031_010--Hb_005054_010 Hb_168031_010--Hb_004125_080 Hb_174644_010 Hb_174644_010 Hb_023536_020--Hb_174644_010 Hb_023536_020--Hb_002374_070 Hb_003839_060 Hb_003839_060 Hb_023536_020--Hb_003839_060 Hb_023536_020--Hb_000433_060 Hb_004125_080--Hb_006590_040 Hb_004125_080--Hb_002374_070 Hb_004125_080--Hb_002116_020 Hb_008200_010 Hb_008200_010 Hb_004125_080--Hb_008200_010 Hb_002116_020--Hb_006590_040 Hb_002116_020--Hb_005054_010 Hb_000433_060--Hb_174644_010 Hb_031022_040 Hb_031022_040 Hb_000433_060--Hb_031022_040 Hb_014214_010 Hb_014214_010 Hb_000433_060--Hb_014214_010 Hb_000903_050 Hb_000903_050 Hb_000433_060--Hb_000903_050 Hb_005306_200 Hb_005306_200 Hb_000433_060--Hb_005306_200 Hb_001808_010 Hb_001808_010 Hb_000433_060--Hb_001808_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0368243 7.89629 0.350179 15.0348 0 0.0653897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.027275 0.131751

CAGE analysis