Hb_002116_020

Information

Type -
Description -
Location Contig2116: 81701-84991
Sequence    

Annotation

kegg
ID rcu:RCOM_0616890
description Pectinesterase-2 precursor, putative (EC:3.1.1.11)
nr
ID XP_012066262.1
description PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
swissprot
ID Q9LYT5
description Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1
trembl
ID A0A067L393
description Pectinesterase OS=Jatropha curcas GN=JCGZ_23829 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable pectinesterase pectinesterase inhibitor 35

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21911: 82076-84255 , PASA_asmbl_21912: 82076-84063
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002116_020 0.0 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
2 Hb_006590_040 0.0330591455 - - amino acid permease, putative [Ricinus communis]
3 Hb_168031_010 0.0460250651 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6 [Jatropha curcas]
4 Hb_004125_080 0.0742249943 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
5 Hb_005054_010 0.0802576247 - - amino acid transporter, putative [Ricinus communis]
6 Hb_002411_070 0.0806719236 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
7 Hb_000373_110 0.0836830841 - - Nodulin, putative [Ricinus communis]
8 Hb_002374_070 0.0884354578 - - amino acid transporter, putative [Ricinus communis]
9 Hb_008200_010 0.0930088202 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
10 Hb_000007_020 0.099770858 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
11 Hb_023536_020 0.1100973941 - - Nicotianamine synthase, putative [Ricinus communis]
12 Hb_111985_090 0.113144952 - - hypothetical protein RCOM_1595950 [Ricinus communis]
13 Hb_000433_060 0.1192986606 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
14 Hb_027402_110 0.1284178438 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
15 Hb_008566_070 0.1294603984 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001808_010 0.1329828943 - - PREDICTED: dirigent protein 23-like [Jatropha curcas]
17 Hb_001502_010 0.1358014857 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
18 Hb_005695_050 0.1359164322 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
19 Hb_174644_010 0.1371657579 - - -
20 Hb_014214_010 0.1386153085 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_002116_020 Hb_002116_020 Hb_006590_040 Hb_006590_040 Hb_002116_020--Hb_006590_040 Hb_168031_010 Hb_168031_010 Hb_002116_020--Hb_168031_010 Hb_004125_080 Hb_004125_080 Hb_002116_020--Hb_004125_080 Hb_005054_010 Hb_005054_010 Hb_002116_020--Hb_005054_010 Hb_002411_070 Hb_002411_070 Hb_002116_020--Hb_002411_070 Hb_000373_110 Hb_000373_110 Hb_002116_020--Hb_000373_110 Hb_006590_040--Hb_004125_080 Hb_006590_040--Hb_168031_010 Hb_008200_010 Hb_008200_010 Hb_006590_040--Hb_008200_010 Hb_006590_040--Hb_002411_070 Hb_002374_070 Hb_002374_070 Hb_006590_040--Hb_002374_070 Hb_168031_010--Hb_000373_110 Hb_168031_010--Hb_002411_070 Hb_168031_010--Hb_005054_010 Hb_168031_010--Hb_004125_080 Hb_004125_080--Hb_002374_070 Hb_004125_080--Hb_002411_070 Hb_004125_080--Hb_008200_010 Hb_004125_080--Hb_000373_110 Hb_005054_010--Hb_000373_110 Hb_005054_010--Hb_006590_040 Hb_007885_120 Hb_007885_120 Hb_005054_010--Hb_007885_120 Hb_005054_010--Hb_004125_080 Hb_002411_070--Hb_000373_110 Hb_023536_020 Hb_023536_020 Hb_002411_070--Hb_023536_020 Hb_002411_070--Hb_002374_070 Hb_000373_110--Hb_023536_020 Hb_000433_060 Hb_000433_060 Hb_000373_110--Hb_000433_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.6922 0.427662 22.1651 0.0110021 0.0230475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0670548 0.884746

CAGE analysis