Hb_002374_070

Information

Type -
Description -
Location Contig2374: 65056-67055
Sequence    

Annotation

kegg
ID rcu:RCOM_0562570
description amino acid transporter, putative
nr
ID XP_002520323.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q39134
description Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2
trembl
ID O82044
description Amino acid carrier OS=Ricinus communis GN=aap1 PE=2 SV=1
Gene Ontology
ID GO:0005737
description amino acid permease 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24843: 64817-67056
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_070 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_004125_080 0.0633624 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
3 Hb_002411_070 0.068442452 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
4 Hb_008200_010 0.0696896822 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
5 Hb_006590_040 0.0699558338 - - amino acid permease, putative [Ricinus communis]
6 Hb_023536_020 0.0763328276 - - Nicotianamine synthase, putative [Ricinus communis]
7 Hb_002116_020 0.0884354578 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
8 Hb_005695_050 0.0940887647 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
9 Hb_168031_010 0.0977807877 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6 [Jatropha curcas]
10 Hb_000373_110 0.0996184771 - - Nodulin, putative [Ricinus communis]
11 Hb_001502_010 0.1012848084 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
12 Hb_174644_010 0.102563235 - - -
13 Hb_003839_060 0.1107980246 - - PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]
14 Hb_027402_110 0.1144723255 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
15 Hb_000433_060 0.1153138504 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
16 Hb_000007_020 0.115392568 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
17 Hb_000628_100 0.1219562429 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
18 Hb_008566_070 0.1321857116 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000245_070 0.1332583597 - - PREDICTED: uncharacterized protein LOC105141276 [Populus euphratica]
20 Hb_001104_250 0.1341297885 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]

Gene co-expression network

sample Hb_002374_070 Hb_002374_070 Hb_004125_080 Hb_004125_080 Hb_002374_070--Hb_004125_080 Hb_002411_070 Hb_002411_070 Hb_002374_070--Hb_002411_070 Hb_008200_010 Hb_008200_010 Hb_002374_070--Hb_008200_010 Hb_006590_040 Hb_006590_040 Hb_002374_070--Hb_006590_040 Hb_023536_020 Hb_023536_020 Hb_002374_070--Hb_023536_020 Hb_002116_020 Hb_002116_020 Hb_002374_070--Hb_002116_020 Hb_004125_080--Hb_006590_040 Hb_004125_080--Hb_002411_070 Hb_004125_080--Hb_002116_020 Hb_004125_080--Hb_008200_010 Hb_000373_110 Hb_000373_110 Hb_004125_080--Hb_000373_110 Hb_002411_070--Hb_000373_110 Hb_002411_070--Hb_023536_020 Hb_002411_070--Hb_006590_040 Hb_002411_070--Hb_002116_020 Hb_001502_010 Hb_001502_010 Hb_008200_010--Hb_001502_010 Hb_008200_010--Hb_006590_040 Hb_005695_050 Hb_005695_050 Hb_008200_010--Hb_005695_050 Hb_027402_110 Hb_027402_110 Hb_008200_010--Hb_027402_110 Hb_000007_020 Hb_000007_020 Hb_008200_010--Hb_000007_020 Hb_006590_040--Hb_002116_020 Hb_168031_010 Hb_168031_010 Hb_006590_040--Hb_168031_010 Hb_174644_010 Hb_174644_010 Hb_023536_020--Hb_174644_010 Hb_023536_020--Hb_000373_110 Hb_003839_060 Hb_003839_060 Hb_023536_020--Hb_003839_060 Hb_000433_060 Hb_000433_060 Hb_023536_020--Hb_000433_060 Hb_002116_020--Hb_168031_010 Hb_005054_010 Hb_005054_010 Hb_002116_020--Hb_005054_010 Hb_002116_020--Hb_000373_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0155613 11.5483 1.02165 30.7135 0.243604 0.0233665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0285152 0 0 0.0268372 0.564998

CAGE analysis