Hb_168031_010

Information

Type -
Description -
Location Contig168031: 730-3485
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09310g
description POPTRDRAFT_819189; proton-dependent oligopeptide transport family protein
nr
ID XP_012087982.1
description PREDICTED: protein NRT1/ PTR FAMILY 5.6 [Jatropha curcas]
swissprot
ID Q9M331
description Protein NRT1/ PTR FAMILY 5.7 OS=Arabidopsis thaliana GN=NPF5.7 PE=2 SV=2
trembl
ID A0A067JNY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25102 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15610: 847-5548
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168031_010 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6 [Jatropha curcas]
2 Hb_002116_020 0.0460250651 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
3 Hb_006590_040 0.064094155 - - amino acid permease, putative [Ricinus communis]
4 Hb_000373_110 0.0703822593 - - Nodulin, putative [Ricinus communis]
5 Hb_002411_070 0.0852078097 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
6 Hb_005054_010 0.0911981954 - - amino acid transporter, putative [Ricinus communis]
7 Hb_004125_080 0.095149728 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
8 Hb_002374_070 0.0977807877 - - amino acid transporter, putative [Ricinus communis]
9 Hb_023536_020 0.1019087306 - - Nicotianamine synthase, putative [Ricinus communis]
10 Hb_008200_010 0.1096717105 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
11 Hb_000433_060 0.1198488044 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
12 Hb_111985_090 0.1300394261 - - hypothetical protein RCOM_1595950 [Ricinus communis]
13 Hb_000007_020 0.1320008618 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
14 Hb_001808_010 0.1321478466 - - PREDICTED: dirigent protein 23-like [Jatropha curcas]
15 Hb_174644_010 0.1331741311 - - -
16 Hb_004007_190 0.1351893743 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
17 Hb_008566_070 0.1353654608 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000115_260 0.1384532417 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH75 [Vitis vinifera]
19 Hb_000259_100 0.1385767857 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
20 Hb_005511_070 0.138577408 - - -

Gene co-expression network

sample Hb_168031_010 Hb_168031_010 Hb_002116_020 Hb_002116_020 Hb_168031_010--Hb_002116_020 Hb_006590_040 Hb_006590_040 Hb_168031_010--Hb_006590_040 Hb_000373_110 Hb_000373_110 Hb_168031_010--Hb_000373_110 Hb_002411_070 Hb_002411_070 Hb_168031_010--Hb_002411_070 Hb_005054_010 Hb_005054_010 Hb_168031_010--Hb_005054_010 Hb_004125_080 Hb_004125_080 Hb_168031_010--Hb_004125_080 Hb_002116_020--Hb_006590_040 Hb_002116_020--Hb_004125_080 Hb_002116_020--Hb_005054_010 Hb_002116_020--Hb_002411_070 Hb_002116_020--Hb_000373_110 Hb_006590_040--Hb_004125_080 Hb_008200_010 Hb_008200_010 Hb_006590_040--Hb_008200_010 Hb_006590_040--Hb_002411_070 Hb_002374_070 Hb_002374_070 Hb_006590_040--Hb_002374_070 Hb_000373_110--Hb_002411_070 Hb_023536_020 Hb_023536_020 Hb_000373_110--Hb_023536_020 Hb_000373_110--Hb_004125_080 Hb_000433_060 Hb_000433_060 Hb_000373_110--Hb_000433_060 Hb_002411_070--Hb_004125_080 Hb_002411_070--Hb_023536_020 Hb_002411_070--Hb_002374_070 Hb_005054_010--Hb_000373_110 Hb_005054_010--Hb_006590_040 Hb_007885_120 Hb_007885_120 Hb_005054_010--Hb_007885_120 Hb_005054_010--Hb_004125_080 Hb_004125_080--Hb_002374_070 Hb_004125_080--Hb_008200_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.7908 0.523313 19.9231 0 0.0311917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.645889

CAGE analysis