Hb_000433_060

Information

Type -
Description -
Location Contig433: 127024-127645
Sequence    

Annotation

kegg
ID egr:104421566
description cell number regulator 10-like
nr
ID KCW83840.1
description hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
swissprot
ID Q9SX26
description Protein PLANT CADMIUM RESISTANCE 12 OS=Arabidopsis thaliana GN=PCR12 PE=2 SV=2
trembl
ID A0A059D0U9
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_B00708 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42376: 112089-127268 , PASA_asmbl_42377: 127308-127820
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000433_060 0.0 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
2 Hb_174644_010 0.064010708 - - -
3 Hb_031022_040 0.0738107436 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
4 Hb_014214_010 0.0763239844 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
5 Hb_000903_050 0.0782079065 - - hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]
6 Hb_005306_200 0.0791576096 - - -
7 Hb_001808_010 0.0803792071 - - PREDICTED: dirigent protein 23-like [Jatropha curcas]
8 Hb_005511_070 0.0808792727 - - -
9 Hb_000115_260 0.0815399888 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH75 [Vitis vinifera]
10 Hb_000056_180 0.0819985163 - - -
11 Hb_023536_020 0.0837073139 - - Nicotianamine synthase, putative [Ricinus communis]
12 Hb_000061_080 0.0838341136 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
13 Hb_000373_110 0.0839055809 - - Nodulin, putative [Ricinus communis]
14 Hb_003059_060 0.0867120039 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
15 Hb_000259_100 0.0930280116 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
16 Hb_002411_070 0.0954574218 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
17 Hb_004125_080 0.0959886887 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
18 Hb_028390_020 0.0965167401 - - -
19 Hb_000099_180 0.0992287745 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]
20 Hb_003839_060 0.1039725226 - - PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]

Gene co-expression network

sample Hb_000433_060 Hb_000433_060 Hb_174644_010 Hb_174644_010 Hb_000433_060--Hb_174644_010 Hb_031022_040 Hb_031022_040 Hb_000433_060--Hb_031022_040 Hb_014214_010 Hb_014214_010 Hb_000433_060--Hb_014214_010 Hb_000903_050 Hb_000903_050 Hb_000433_060--Hb_000903_050 Hb_005306_200 Hb_005306_200 Hb_000433_060--Hb_005306_200 Hb_001808_010 Hb_001808_010 Hb_000433_060--Hb_001808_010 Hb_003839_060 Hb_003839_060 Hb_174644_010--Hb_003839_060 Hb_023536_020 Hb_023536_020 Hb_174644_010--Hb_023536_020 Hb_000172_260 Hb_000172_260 Hb_174644_010--Hb_000172_260 Hb_000164_250 Hb_000164_250 Hb_174644_010--Hb_000164_250 Hb_003442_020 Hb_003442_020 Hb_174644_010--Hb_003442_020 Hb_031022_040--Hb_000903_050 Hb_031022_040--Hb_005306_200 Hb_005511_070 Hb_005511_070 Hb_031022_040--Hb_005511_070 Hb_000115_260 Hb_000115_260 Hb_031022_040--Hb_000115_260 Hb_000056_180 Hb_000056_180 Hb_031022_040--Hb_000056_180 Hb_000061_080 Hb_000061_080 Hb_031022_040--Hb_000061_080 Hb_014214_010--Hb_001808_010 Hb_000976_090 Hb_000976_090 Hb_014214_010--Hb_000976_090 Hb_002053_070 Hb_002053_070 Hb_014214_010--Hb_002053_070 Hb_014214_010--Hb_000903_050 Hb_014214_010--Hb_005306_200 Hb_000903_050--Hb_005306_200 Hb_000903_050--Hb_005511_070 Hb_000903_050--Hb_000115_260 Hb_000259_100 Hb_000259_100 Hb_000903_050--Hb_000259_100 Hb_000903_050--Hb_000056_180 Hb_005306_200--Hb_005511_070 Hb_005306_200--Hb_000115_260 Hb_005306_200--Hb_000259_100 Hb_005306_200--Hb_000056_180 Hb_000373_110 Hb_000373_110 Hb_001808_010--Hb_000373_110 Hb_002422_010 Hb_002422_010 Hb_001808_010--Hb_002422_010 Hb_003012_010 Hb_003012_010 Hb_001808_010--Hb_003012_010 Hb_005054_010 Hb_005054_010 Hb_001808_010--Hb_005054_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 11.582 0.352712 26.8092 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0685189 0

CAGE analysis