Hb_014214_010

Information

Type -
Description -
Location Contig14214: 7596-10493
Sequence    

Annotation

kegg
ID rcu:RCOM_0121530
description cationic amino acid transporter, putative
nr
ID XP_012070111.1
description PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9LZ20
description Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana GN=CAT6 PE=2 SV=1
trembl
ID B9SZ12
description Cationic amino acid transporter, putative OS=Ricinus communis GN=RCOM_0121530 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cationic amino acid transporter chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11260: 8248-9071 , PASA_asmbl_11261: 9360-10494
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014214_010 0.0 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
2 Hb_001808_010 0.0755636201 - - PREDICTED: dirigent protein 23-like [Jatropha curcas]
3 Hb_000433_060 0.0763239844 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
4 Hb_000976_090 0.0794859955 - - -
5 Hb_002053_070 0.080409655 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 14 [Populus euphratica]
6 Hb_000903_050 0.091849328 - - hypothetical protein A259_26892 [Pseudomonas syringae pv. actinidiae ICMP 19070]
7 Hb_005306_200 0.0921258097 - - -
8 Hb_005511_070 0.0927476602 - - -
9 Hb_000115_260 0.0930186767 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH75 [Vitis vinifera]
10 Hb_031022_040 0.0931662017 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
11 Hb_000259_100 0.0993339374 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
12 Hb_000056_180 0.1060338901 - - -
13 Hb_000061_080 0.108122715 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
14 Hb_003059_060 0.1112880144 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
15 Hb_004125_080 0.1142264532 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
16 Hb_000373_110 0.1164000441 - - Nodulin, putative [Ricinus communis]
17 Hb_028390_020 0.1215297264 - - -
18 Hb_022264_010 0.1227992286 - - PREDICTED: uncharacterized protein LOC105795741 [Gossypium raimondii]
19 Hb_000099_180 0.1242794102 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]
20 Hb_174644_010 0.1257438988 - - -

Gene co-expression network

sample Hb_014214_010 Hb_014214_010 Hb_001808_010 Hb_001808_010 Hb_014214_010--Hb_001808_010 Hb_000433_060 Hb_000433_060 Hb_014214_010--Hb_000433_060 Hb_000976_090 Hb_000976_090 Hb_014214_010--Hb_000976_090 Hb_002053_070 Hb_002053_070 Hb_014214_010--Hb_002053_070 Hb_000903_050 Hb_000903_050 Hb_014214_010--Hb_000903_050 Hb_005306_200 Hb_005306_200 Hb_014214_010--Hb_005306_200 Hb_001808_010--Hb_000433_060 Hb_000373_110 Hb_000373_110 Hb_001808_010--Hb_000373_110 Hb_002422_010 Hb_002422_010 Hb_001808_010--Hb_002422_010 Hb_003012_010 Hb_003012_010 Hb_001808_010--Hb_003012_010 Hb_005054_010 Hb_005054_010 Hb_001808_010--Hb_005054_010 Hb_174644_010 Hb_174644_010 Hb_000433_060--Hb_174644_010 Hb_031022_040 Hb_031022_040 Hb_000433_060--Hb_031022_040 Hb_000433_060--Hb_000903_050 Hb_000433_060--Hb_005306_200 Hb_000976_090--Hb_002053_070 Hb_009466_040 Hb_009466_040 Hb_000976_090--Hb_009466_040 Hb_000056_180 Hb_000056_180 Hb_000976_090--Hb_000056_180 Hb_000061_080 Hb_000061_080 Hb_000976_090--Hb_000061_080 Hb_003059_060 Hb_003059_060 Hb_000976_090--Hb_003059_060 Hb_002053_070--Hb_009466_040 Hb_002053_070--Hb_000056_180 Hb_002053_070--Hb_000061_080 Hb_002053_070--Hb_031022_040 Hb_000903_050--Hb_005306_200 Hb_005511_070 Hb_005511_070 Hb_000903_050--Hb_005511_070 Hb_000115_260 Hb_000115_260 Hb_000903_050--Hb_000115_260 Hb_000903_050--Hb_031022_040 Hb_000259_100 Hb_000259_100 Hb_000903_050--Hb_000259_100 Hb_000903_050--Hb_000056_180 Hb_005306_200--Hb_005511_070 Hb_005306_200--Hb_000115_260 Hb_005306_200--Hb_000259_100 Hb_005306_200--Hb_031022_040 Hb_005306_200--Hb_000056_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.977318 0.00844253 2.06444 0.0106408 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0324092 0

CAGE analysis