Hb_009466_040

Information

Type -
Description -
Location Contig9466: 60588-61100
Sequence    

Annotation

kegg
ID pop:POPTR_0002s10890g
description hypothetical protein
nr
ID XP_006386442.1
description hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
swissprot
ID Q9LSK9
description Uncharacterized protein At5g65660 OS=Arabidopsis thaliana GN=At5g65660 PE=2 SV=1
trembl
ID U5GPZ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s10890g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009466_040 0.0 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
2 Hb_000334_040 0.0355438341 - - hypothetical protein POPTR_0001s41860g [Populus trichocarpa]
3 Hb_177587_010 0.0596203894 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
4 Hb_050229_030 0.0624802698 - - unnamed protein product [Coffea canephora]
5 Hb_000976_090 0.081834878 - - -
6 Hb_002053_070 0.0857050375 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 14 [Populus euphratica]
7 Hb_001645_100 0.1189912747 - - -
8 Hb_012760_080 0.1270358223 - - conserved hypothetical protein [Ricinus communis]
9 Hb_058095_010 0.1274832851 - - PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
10 Hb_000284_090 0.1293708599 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
11 Hb_001825_030 0.1294930121 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
12 Hb_001147_120 0.1303157108 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
13 Hb_000099_180 0.1328329113 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]
14 Hb_028390_020 0.1340930994 - - -
15 Hb_000321_020 0.1362258458 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
16 Hb_002304_120 0.1385326861 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003059_060 0.1402870711 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
18 Hb_000327_050 0.1415910085 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
19 Hb_000061_080 0.1428058376 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
20 Hb_008385_010 0.1428462724 - - sulfate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_009466_040 Hb_009466_040 Hb_000334_040 Hb_000334_040 Hb_009466_040--Hb_000334_040 Hb_177587_010 Hb_177587_010 Hb_009466_040--Hb_177587_010 Hb_050229_030 Hb_050229_030 Hb_009466_040--Hb_050229_030 Hb_000976_090 Hb_000976_090 Hb_009466_040--Hb_000976_090 Hb_002053_070 Hb_002053_070 Hb_009466_040--Hb_002053_070 Hb_001645_100 Hb_001645_100 Hb_009466_040--Hb_001645_100 Hb_000334_040--Hb_050229_030 Hb_000334_040--Hb_177587_010 Hb_000334_040--Hb_000976_090 Hb_000334_040--Hb_001645_100 Hb_000334_040--Hb_002053_070 Hb_177587_010--Hb_050229_030 Hb_001013_070 Hb_001013_070 Hb_177587_010--Hb_001013_070 Hb_000327_050 Hb_000327_050 Hb_177587_010--Hb_000327_050 Hb_002304_120 Hb_002304_120 Hb_177587_010--Hb_002304_120 Hb_050229_030--Hb_001645_100 Hb_050229_030--Hb_001013_070 Hb_008385_010 Hb_008385_010 Hb_050229_030--Hb_008385_010 Hb_000976_090--Hb_002053_070 Hb_014214_010 Hb_014214_010 Hb_000976_090--Hb_014214_010 Hb_000056_180 Hb_000056_180 Hb_000976_090--Hb_000056_180 Hb_000061_080 Hb_000061_080 Hb_000976_090--Hb_000061_080 Hb_003059_060 Hb_003059_060 Hb_000976_090--Hb_003059_060 Hb_002053_070--Hb_014214_010 Hb_002053_070--Hb_000056_180 Hb_002053_070--Hb_000061_080 Hb_031022_040 Hb_031022_040 Hb_002053_070--Hb_031022_040 Hb_000501_090 Hb_000501_090 Hb_001645_100--Hb_000501_090 Hb_015026_010 Hb_015026_010 Hb_001645_100--Hb_015026_010 Hb_000146_100 Hb_000146_100 Hb_001645_100--Hb_000146_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.947839 0 3.92067 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.160409 0

CAGE analysis