Hb_177587_010

Information

Type -
Description -
Location Contig177587: 3-449
Sequence    

Annotation

kegg
ID rcu:RCOM_0739230
description amidase, putative (EC:3.5.1.4)
nr
ID XP_012084367.1
description PREDICTED: putative amidase C869.01 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K5N3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19575 PE=4 SV=1
Gene Ontology
ID GO:0004040
description amidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_177587_010 0.0 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
2 Hb_000334_040 0.0306373477 - - hypothetical protein POPTR_0001s41860g [Populus trichocarpa]
3 Hb_050229_030 0.036362894 - - unnamed protein product [Coffea canephora]
4 Hb_009466_040 0.0596203894 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
5 Hb_001013_070 0.1233393744 - - -
6 Hb_000327_050 0.1357542745 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
7 Hb_002304_120 0.1357729989 - - conserved hypothetical protein [Ricinus communis]
8 Hb_013399_040 0.1360660286 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
9 Hb_002820_100 0.1360694678 - - hypothetical protein OsI_33031 [Oryza sativa Indica Group]
10 Hb_000321_020 0.1360866131 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
11 Hb_170674_020 0.136963916 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
12 Hb_000318_070 0.13785221 - - PREDICTED: peroxidase 10-like [Jatropha curcas]
13 Hb_001147_120 0.1390237434 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
14 Hb_000086_160 0.1390244788 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
15 Hb_000976_090 0.1399051206 - - -
16 Hb_001825_030 0.1399286423 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
17 Hb_000284_090 0.1400845914 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
18 Hb_001998_160 0.1416050211 - - PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]
19 Hb_004148_030 0.1424409514 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
20 Hb_002217_480 0.143586822 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]

Gene co-expression network

sample Hb_177587_010 Hb_177587_010 Hb_000334_040 Hb_000334_040 Hb_177587_010--Hb_000334_040 Hb_050229_030 Hb_050229_030 Hb_177587_010--Hb_050229_030 Hb_009466_040 Hb_009466_040 Hb_177587_010--Hb_009466_040 Hb_001013_070 Hb_001013_070 Hb_177587_010--Hb_001013_070 Hb_000327_050 Hb_000327_050 Hb_177587_010--Hb_000327_050 Hb_002304_120 Hb_002304_120 Hb_177587_010--Hb_002304_120 Hb_000334_040--Hb_050229_030 Hb_000334_040--Hb_009466_040 Hb_000976_090 Hb_000976_090 Hb_000334_040--Hb_000976_090 Hb_001645_100 Hb_001645_100 Hb_000334_040--Hb_001645_100 Hb_002053_070 Hb_002053_070 Hb_000334_040--Hb_002053_070 Hb_050229_030--Hb_009466_040 Hb_050229_030--Hb_001645_100 Hb_050229_030--Hb_001013_070 Hb_008385_010 Hb_008385_010 Hb_050229_030--Hb_008385_010 Hb_009466_040--Hb_000976_090 Hb_009466_040--Hb_002053_070 Hb_009466_040--Hb_001645_100 Hb_005373_030 Hb_005373_030 Hb_001013_070--Hb_005373_030 Hb_003582_010 Hb_003582_010 Hb_001013_070--Hb_003582_010 Hb_003212_030 Hb_003212_030 Hb_001013_070--Hb_003212_030 Hb_033153_030 Hb_033153_030 Hb_001013_070--Hb_033153_030 Hb_000445_480 Hb_000445_480 Hb_001013_070--Hb_000445_480 Hb_013399_040 Hb_013399_040 Hb_000327_050--Hb_013399_040 Hb_000327_050--Hb_002304_120 Hb_000321_020 Hb_000321_020 Hb_000327_050--Hb_000321_020 Hb_170674_020 Hb_170674_020 Hb_000327_050--Hb_170674_020 Hb_000318_070 Hb_000318_070 Hb_000327_050--Hb_000318_070 Hb_001147_120 Hb_001147_120 Hb_000327_050--Hb_001147_120 Hb_002304_120--Hb_000321_020 Hb_002304_120--Hb_013399_040 Hb_002304_120--Hb_170674_020 Hb_002304_120--Hb_001147_120 Hb_002304_120--Hb_000318_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.10884 0 6.69232 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.29428 0

CAGE analysis