Hb_050229_030

Information

Type -
Description -
Location Contig50229: 21185-23694
Sequence    

Annotation

kegg
ID rcu:RCOM_0901450
description receptor-kinase, putative (EC:1.3.1.74 2.7.10.2)
nr
ID CDP18442.1
description unnamed protein product [Coffea canephora]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A068VCX8
description Coffea canephora DH200=94 genomic scaffold, scaffold_235 OS=Coffea canephora GN=GSCOC_T00007262001 PE=4 SV=1
Gene Ontology
ID GO:0016740
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45905: 23547-23830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050229_030 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_000334_040 0.0284597333 - - hypothetical protein POPTR_0001s41860g [Populus trichocarpa]
3 Hb_177587_010 0.036362894 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
4 Hb_009466_040 0.0624802698 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
5 Hb_001645_100 0.1123915777 - - -
6 Hb_001013_070 0.118576519 - - -
7 Hb_008385_010 0.1367331131 - - sulfate transporter, putative [Ricinus communis]
8 Hb_000976_090 0.1414105053 - - -
9 Hb_002053_070 0.1424983221 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 14 [Populus euphratica]
10 Hb_005373_030 0.148610956 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000501_090 0.149956037 - - -
12 Hb_002511_050 0.1546814059 - - ATP binding protein, putative [Ricinus communis]
13 Hb_033153_030 0.1605004673 - - PREDICTED: uncharacterized protein LOC105650145 [Jatropha curcas]
14 Hb_000086_160 0.161392675 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
15 Hb_003582_010 0.1634708484 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
16 Hb_000321_020 0.1637892565 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
17 Hb_002304_120 0.164053001 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002820_100 0.1644047213 - - hypothetical protein OsI_33031 [Oryza sativa Indica Group]
19 Hb_001147_120 0.1645061209 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
20 Hb_000327_050 0.1646617413 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_050229_030 Hb_050229_030 Hb_000334_040 Hb_000334_040 Hb_050229_030--Hb_000334_040 Hb_177587_010 Hb_177587_010 Hb_050229_030--Hb_177587_010 Hb_009466_040 Hb_009466_040 Hb_050229_030--Hb_009466_040 Hb_001645_100 Hb_001645_100 Hb_050229_030--Hb_001645_100 Hb_001013_070 Hb_001013_070 Hb_050229_030--Hb_001013_070 Hb_008385_010 Hb_008385_010 Hb_050229_030--Hb_008385_010 Hb_000334_040--Hb_177587_010 Hb_000334_040--Hb_009466_040 Hb_000976_090 Hb_000976_090 Hb_000334_040--Hb_000976_090 Hb_000334_040--Hb_001645_100 Hb_002053_070 Hb_002053_070 Hb_000334_040--Hb_002053_070 Hb_177587_010--Hb_009466_040 Hb_177587_010--Hb_001013_070 Hb_000327_050 Hb_000327_050 Hb_177587_010--Hb_000327_050 Hb_002304_120 Hb_002304_120 Hb_177587_010--Hb_002304_120 Hb_009466_040--Hb_000976_090 Hb_009466_040--Hb_002053_070 Hb_009466_040--Hb_001645_100 Hb_000501_090 Hb_000501_090 Hb_001645_100--Hb_000501_090 Hb_015026_010 Hb_015026_010 Hb_001645_100--Hb_015026_010 Hb_000146_100 Hb_000146_100 Hb_001645_100--Hb_000146_100 Hb_005373_030 Hb_005373_030 Hb_001013_070--Hb_005373_030 Hb_003582_010 Hb_003582_010 Hb_001013_070--Hb_003582_010 Hb_003212_030 Hb_003212_030 Hb_001013_070--Hb_003212_030 Hb_033153_030 Hb_033153_030 Hb_001013_070--Hb_033153_030 Hb_000445_480 Hb_000445_480 Hb_001013_070--Hb_000445_480 Hb_002511_050 Hb_002511_050 Hb_008385_010--Hb_002511_050 Hb_008385_010--Hb_003582_010 Hb_008385_010--Hb_001645_100 Hb_008385_010--Hb_001013_070 Hb_005900_020 Hb_005900_020 Hb_008385_010--Hb_005900_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0707736 0 0.3884 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0254909 0

CAGE analysis