Hb_002511_050

Information

Type -
Description -
Location Contig2511: 74680-76242
Sequence    

Annotation

kegg
ID rcu:RCOM_0194910
description ATP binding protein, putative
nr
ID XP_002534483.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q54DY9
description Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1
trembl
ID B9T8B4
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0194910 PE=4 SV=1
Gene Ontology
ID GO:0005739
description probable mitochondrial chaperone bcs1-b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002511_050 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_008385_010 0.0546555124 - - sulfate transporter, putative [Ricinus communis]
3 Hb_010926_020 0.1055872073 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Camelina sativa]
4 Hb_001529_010 0.1074974618 - - -
5 Hb_003582_010 0.1170002232 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
6 Hb_000445_480 0.1187560373 - - cytochrome P450, putative [Ricinus communis]
7 Hb_005736_010 0.1201406769 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
8 Hb_001013_070 0.1227357829 - - -
9 Hb_033153_030 0.1299633615 - - PREDICTED: uncharacterized protein LOC105650145 [Jatropha curcas]
10 Hb_072670_010 0.137157599 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
11 Hb_001255_030 0.1376436249 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840, partial [Sesamum indicum]
12 Hb_002894_020 0.1440239628 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
13 Hb_057018_010 0.1455218837 - - hypothetical protein JCGZ_04004 [Jatropha curcas]
14 Hb_005373_030 0.151640251 - - conserved hypothetical protein [Ricinus communis]
15 Hb_050229_030 0.1546814059 - - unnamed protein product [Coffea canephora]
16 Hb_000334_040 0.1594035481 - - hypothetical protein POPTR_0001s41860g [Populus trichocarpa]
17 Hb_001645_100 0.1625281496 - - -
18 Hb_004757_040 0.1631358536 - - -
19 Hb_005900_020 0.1637894015 - - -
20 Hb_000149_020 0.1644067807 - - Proline-rich receptor-like protein kinase PERK14 [Glycine soja]

Gene co-expression network

sample Hb_002511_050 Hb_002511_050 Hb_008385_010 Hb_008385_010 Hb_002511_050--Hb_008385_010 Hb_010926_020 Hb_010926_020 Hb_002511_050--Hb_010926_020 Hb_001529_010 Hb_001529_010 Hb_002511_050--Hb_001529_010 Hb_003582_010 Hb_003582_010 Hb_002511_050--Hb_003582_010 Hb_000445_480 Hb_000445_480 Hb_002511_050--Hb_000445_480 Hb_005736_010 Hb_005736_010 Hb_002511_050--Hb_005736_010 Hb_008385_010--Hb_003582_010 Hb_001645_100 Hb_001645_100 Hb_008385_010--Hb_001645_100 Hb_001013_070 Hb_001013_070 Hb_008385_010--Hb_001013_070 Hb_005900_020 Hb_005900_020 Hb_008385_010--Hb_005900_020 Hb_050229_030 Hb_050229_030 Hb_008385_010--Hb_050229_030 Hb_057018_010 Hb_057018_010 Hb_010926_020--Hb_057018_010 Hb_072670_010 Hb_072670_010 Hb_010926_020--Hb_072670_010 Hb_010926_020--Hb_005736_010 Hb_002894_020 Hb_002894_020 Hb_010926_020--Hb_002894_020 Hb_000224_020 Hb_000224_020 Hb_010926_020--Hb_000224_020 Hb_033153_030 Hb_033153_030 Hb_001529_010--Hb_033153_030 Hb_001529_010--Hb_000445_480 Hb_000194_030 Hb_000194_030 Hb_001529_010--Hb_000194_030 Hb_007426_100 Hb_007426_100 Hb_001529_010--Hb_007426_100 Hb_004319_100 Hb_004319_100 Hb_001529_010--Hb_004319_100 Hb_001529_010--Hb_002894_020 Hb_003582_010--Hb_001013_070 Hb_000705_070 Hb_000705_070 Hb_003582_010--Hb_000705_070 Hb_001322_010 Hb_001322_010 Hb_003582_010--Hb_001322_010 Hb_001013_060 Hb_001013_060 Hb_003582_010--Hb_001013_060 Hb_000445_480--Hb_033153_030 Hb_000445_480--Hb_002894_020 Hb_002874_100 Hb_002874_100 Hb_000445_480--Hb_002874_100 Hb_000445_480--Hb_007426_100 Hb_000363_100 Hb_000363_100 Hb_000445_480--Hb_000363_100 Hb_005736_010--Hb_072670_010 Hb_005736_010--Hb_057018_010 Hb_107495_060 Hb_107495_060 Hb_005736_010--Hb_107495_060 Hb_033772_040 Hb_033772_040 Hb_005736_010--Hb_033772_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.29791 0.332295 5.82725 0.0131056 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.551626 0

CAGE analysis