Hb_001529_010

Information

Type -
Description -
Location Contig1529: 6333-7171
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13127: 6423-7054
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001529_010 0.0 - - -
2 Hb_033153_030 0.0565078816 - - PREDICTED: uncharacterized protein LOC105650145 [Jatropha curcas]
3 Hb_000445_480 0.0640098988 - - cytochrome P450, putative [Ricinus communis]
4 Hb_000194_030 0.0764482564 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
5 Hb_007426_100 0.0824837141 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004319_100 0.0972313265 - - PREDICTED: gibberellin-regulated protein 14 isoform X3 [Jatropha curcas]
7 Hb_002894_020 0.1017794281 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
8 Hb_002874_100 0.1058190656 - - cytochrome P450, putative [Ricinus communis]
9 Hb_002511_050 0.1074974618 - - ATP binding protein, putative [Ricinus communis]
10 Hb_005373_030 0.1099810538 - - conserved hypothetical protein [Ricinus communis]
11 Hb_159012_010 0.110833017 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 [Jatropha curcas]
12 Hb_004926_010 0.1123163599 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
13 Hb_000480_050 0.1190104558 - - hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]
14 Hb_033772_040 0.1221816035 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007477_020 0.1275138323 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
16 Hb_001013_070 0.1284030048 - - -
17 Hb_010926_020 0.132630905 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Camelina sativa]
18 Hb_002999_010 0.1348758791 - - PREDICTED: extracellular ribonuclease LE-like [Vitis vinifera]
19 Hb_000363_100 0.1407411681 - - -
20 Hb_008385_010 0.141752197 - - sulfate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001529_010 Hb_001529_010 Hb_033153_030 Hb_033153_030 Hb_001529_010--Hb_033153_030 Hb_000445_480 Hb_000445_480 Hb_001529_010--Hb_000445_480 Hb_000194_030 Hb_000194_030 Hb_001529_010--Hb_000194_030 Hb_007426_100 Hb_007426_100 Hb_001529_010--Hb_007426_100 Hb_004319_100 Hb_004319_100 Hb_001529_010--Hb_004319_100 Hb_002894_020 Hb_002894_020 Hb_001529_010--Hb_002894_020 Hb_033153_030--Hb_000445_480 Hb_002874_100 Hb_002874_100 Hb_033153_030--Hb_002874_100 Hb_033153_030--Hb_007426_100 Hb_033153_030--Hb_002894_020 Hb_005373_030 Hb_005373_030 Hb_033153_030--Hb_005373_030 Hb_000445_480--Hb_002894_020 Hb_000445_480--Hb_002874_100 Hb_000445_480--Hb_007426_100 Hb_000363_100 Hb_000363_100 Hb_000445_480--Hb_000363_100 Hb_159012_010 Hb_159012_010 Hb_000194_030--Hb_159012_010 Hb_004926_010 Hb_004926_010 Hb_000194_030--Hb_004926_010 Hb_000194_030--Hb_004319_100 Hb_000194_030--Hb_007426_100 Hb_000480_050 Hb_000480_050 Hb_000194_030--Hb_000480_050 Hb_007426_100--Hb_002874_100 Hb_007426_100--Hb_002894_020 Hb_033772_040 Hb_033772_040 Hb_004319_100--Hb_033772_040 Hb_004319_100--Hb_007426_100 Hb_034310_020 Hb_034310_020 Hb_004319_100--Hb_034310_020 Hb_004319_100--Hb_159012_010 Hb_000224_020 Hb_000224_020 Hb_002894_020--Hb_000224_020 Hb_002894_020--Hb_002874_100 Hb_002894_020--Hb_000363_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.28557 0.757295 12.3486 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.1072 0

CAGE analysis