Hb_004319_100

Information

Type -
Description -
Location Contig4319: 101232-102490
Sequence    

Annotation

kegg
ID cit:102631482
description gibberellin-regulated protein 14-like
nr
ID XP_012082174.1
description PREDICTED: gibberellin-regulated protein 14 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LLX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09653 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004319_100 0.0 - - PREDICTED: gibberellin-regulated protein 14 isoform X3 [Jatropha curcas]
2 Hb_000194_030 0.0680834272 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
3 Hb_033772_040 0.0791452836 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007426_100 0.094549291 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001529_010 0.0972313265 - - -
6 Hb_034310_020 0.1010108189 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Jatropha curcas]
7 Hb_159012_010 0.1050749521 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 [Jatropha curcas]
8 Hb_004926_010 0.1114512473 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
9 Hb_039946_040 0.1119097214 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
10 Hb_033153_030 0.1332410493 - - PREDICTED: uncharacterized protein LOC105650145 [Jatropha curcas]
11 Hb_000445_480 0.1402385802 - - cytochrome P450, putative [Ricinus communis]
12 Hb_006351_040 0.1420235137 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008066_020 0.1421969607 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002894_020 0.1455177414 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
15 Hb_000480_050 0.1474401708 - - hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]
16 Hb_002874_100 0.1501604703 - - cytochrome P450, putative [Ricinus communis]
17 Hb_001091_040 0.1502371367 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
18 Hb_004102_150 0.1543142729 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
19 Hb_000007_070 0.1543876578 - - hypothetical protein POPTR_0008s11290g [Populus trichocarpa]
20 Hb_000935_060 0.1551809101 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]

Gene co-expression network

sample Hb_004319_100 Hb_004319_100 Hb_000194_030 Hb_000194_030 Hb_004319_100--Hb_000194_030 Hb_033772_040 Hb_033772_040 Hb_004319_100--Hb_033772_040 Hb_007426_100 Hb_007426_100 Hb_004319_100--Hb_007426_100 Hb_001529_010 Hb_001529_010 Hb_004319_100--Hb_001529_010 Hb_034310_020 Hb_034310_020 Hb_004319_100--Hb_034310_020 Hb_159012_010 Hb_159012_010 Hb_004319_100--Hb_159012_010 Hb_000194_030--Hb_159012_010 Hb_004926_010 Hb_004926_010 Hb_000194_030--Hb_004926_010 Hb_000194_030--Hb_007426_100 Hb_000194_030--Hb_001529_010 Hb_000480_050 Hb_000480_050 Hb_000194_030--Hb_000480_050 Hb_033772_040--Hb_034310_020 Hb_004474_020 Hb_004474_020 Hb_033772_040--Hb_004474_020 Hb_033772_040--Hb_001529_010 Hb_010926_020 Hb_010926_020 Hb_033772_040--Hb_010926_020 Hb_004899_380 Hb_004899_380 Hb_033772_040--Hb_004899_380 Hb_002874_100 Hb_002874_100 Hb_007426_100--Hb_002874_100 Hb_033153_030 Hb_033153_030 Hb_007426_100--Hb_033153_030 Hb_000445_480 Hb_000445_480 Hb_007426_100--Hb_000445_480 Hb_007426_100--Hb_001529_010 Hb_002894_020 Hb_002894_020 Hb_007426_100--Hb_002894_020 Hb_001529_010--Hb_033153_030 Hb_001529_010--Hb_000445_480 Hb_001529_010--Hb_002894_020 Hb_034310_020--Hb_004474_020 Hb_034310_020--Hb_004899_380 Hb_008406_050 Hb_008406_050 Hb_034310_020--Hb_008406_050 Hb_048987_020 Hb_048987_020 Hb_034310_020--Hb_048987_020 Hb_159012_010--Hb_004926_010 Hb_159012_010--Hb_000480_050 Hb_159012_010--Hb_001529_010 Hb_007477_020 Hb_007477_020 Hb_159012_010--Hb_007477_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.311215 0.628467 5.37528 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.608893 0

CAGE analysis