Hb_004899_380

Information

Type -
Description -
Location Contig4899: 304849-305912
Sequence    

Annotation

kegg
ID rcu:RCOM_0711160
description hypothetical protein
nr
ID XP_002516251.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RR82
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0711160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45233: 305058-305327 , PASA_asmbl_45234: 305431-306031
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_380 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_048987_020 0.0550293416 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
3 Hb_004474_020 0.0670074903 - - aldo-keto reductase, putative [Ricinus communis]
4 Hb_000224_020 0.0840304755 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
5 Hb_001006_080 0.094272774 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
6 Hb_000696_120 0.0964293035 - - PREDICTED: protein FD [Populus euphratica]
7 Hb_034310_020 0.0969633171 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Jatropha curcas]
8 Hb_174829_030 0.1052474983 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010080_040 0.1078640101 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003878_130 0.1109985923 - - -
11 Hb_003216_010 0.1136725572 - - glycosyl hydrolase family protein [Populus trichocarpa]
12 Hb_008406_050 0.1138333121 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 2 [Jatropha curcas]
13 Hb_081228_010 0.1145613773 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
14 Hb_005057_020 0.1189271306 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
15 Hb_004342_040 0.1192807491 - - PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Jatropha curcas]
16 Hb_151027_010 0.1210667536 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
17 Hb_033772_040 0.1236174311 - - conserved hypothetical protein [Ricinus communis]
18 Hb_104362_020 0.1243114479 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
19 Hb_003540_010 0.1322733339 - - -
20 Hb_087314_010 0.135224497 - - -

Gene co-expression network

sample Hb_004899_380 Hb_004899_380 Hb_048987_020 Hb_048987_020 Hb_004899_380--Hb_048987_020 Hb_004474_020 Hb_004474_020 Hb_004899_380--Hb_004474_020 Hb_000224_020 Hb_000224_020 Hb_004899_380--Hb_000224_020 Hb_001006_080 Hb_001006_080 Hb_004899_380--Hb_001006_080 Hb_000696_120 Hb_000696_120 Hb_004899_380--Hb_000696_120 Hb_034310_020 Hb_034310_020 Hb_004899_380--Hb_034310_020 Hb_087314_010 Hb_087314_010 Hb_048987_020--Hb_087314_010 Hb_048987_020--Hb_004474_020 Hb_048987_020--Hb_034310_020 Hb_003878_130 Hb_003878_130 Hb_048987_020--Hb_003878_130 Hb_180695_010 Hb_180695_010 Hb_048987_020--Hb_180695_010 Hb_004474_020--Hb_000224_020 Hb_004474_020--Hb_034310_020 Hb_003777_150 Hb_003777_150 Hb_004474_020--Hb_003777_150 Hb_008406_050 Hb_008406_050 Hb_004474_020--Hb_008406_050 Hb_002894_020 Hb_002894_020 Hb_000224_020--Hb_002894_020 Hb_000224_050 Hb_000224_050 Hb_000224_020--Hb_000224_050 Hb_000917_220 Hb_000917_220 Hb_000224_020--Hb_000917_220 Hb_174829_030 Hb_174829_030 Hb_000224_020--Hb_174829_030 Hb_001006_080--Hb_000696_120 Hb_001006_080--Hb_003878_130 Hb_001006_080--Hb_174829_030 Hb_010080_040 Hb_010080_040 Hb_001006_080--Hb_010080_040 Hb_151027_010 Hb_151027_010 Hb_001006_080--Hb_151027_010 Hb_104362_020 Hb_104362_020 Hb_001006_080--Hb_104362_020 Hb_000696_120--Hb_174829_030 Hb_003216_010 Hb_003216_010 Hb_000696_120--Hb_003216_010 Hb_000696_120--Hb_010080_040 Hb_005057_020 Hb_005057_020 Hb_000696_120--Hb_005057_020 Hb_004342_040 Hb_004342_040 Hb_000696_120--Hb_004342_040 Hb_033772_040 Hb_033772_040 Hb_034310_020--Hb_033772_040 Hb_004319_100 Hb_004319_100 Hb_034310_020--Hb_004319_100 Hb_034310_020--Hb_008406_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.105082 0.220445 0.861119 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0208063 0

CAGE analysis