Hb_003777_150

Information

Type -
Description -
Location Contig3777: 227060-229252
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06820g
description POPTRDRAFT_410576; hypothetical protein
nr
ID XP_012080746.1
description PREDICTED: uncharacterized protein LOC105640938 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9GTI3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06820g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38444: 227104-228238 , PASA_asmbl_38445: 228340-229133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_150 0.0 - - PREDICTED: uncharacterized protein LOC105640938 isoform X1 [Jatropha curcas]
2 Hb_084304_010 0.0613187132 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
3 Hb_003427_070 0.0896033856 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
4 Hb_000628_060 0.0907125715 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
5 Hb_004474_020 0.0999701344 - - aldo-keto reductase, putative [Ricinus communis]
6 Hb_004970_100 0.1006178887 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
7 Hb_069384_010 0.1010576425 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
8 Hb_000188_140 0.1048901974 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
9 Hb_039075_010 0.1057194507 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
10 Hb_030360_010 0.1085593685 - - -
11 Hb_004732_070 0.1109421283 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000152_630 0.1178555636 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
13 Hb_000497_080 0.1204577317 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000186_090 0.1225127693 - - ACC oxidase 1 [Hevea brasiliensis]
15 Hb_004102_180 0.1228981229 - - zinc finger family protein [Populus trichocarpa]
16 Hb_000579_210 0.1235605717 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
17 Hb_006351_050 0.1277421959 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
18 Hb_000739_190 0.1284569778 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
19 Hb_002304_110 0.1301717752 - - hypothetical protein MIMGU_mgv1a023246mg [Erythranthe guttata]
20 Hb_034713_010 0.130191408 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]

Gene co-expression network

sample Hb_003777_150 Hb_003777_150 Hb_084304_010 Hb_084304_010 Hb_003777_150--Hb_084304_010 Hb_003427_070 Hb_003427_070 Hb_003777_150--Hb_003427_070 Hb_000628_060 Hb_000628_060 Hb_003777_150--Hb_000628_060 Hb_004474_020 Hb_004474_020 Hb_003777_150--Hb_004474_020 Hb_004970_100 Hb_004970_100 Hb_003777_150--Hb_004970_100 Hb_069384_010 Hb_069384_010 Hb_003777_150--Hb_069384_010 Hb_084304_010--Hb_003427_070 Hb_006351_050 Hb_006351_050 Hb_084304_010--Hb_006351_050 Hb_000188_140 Hb_000188_140 Hb_084304_010--Hb_000188_140 Hb_001500_020 Hb_001500_020 Hb_084304_010--Hb_001500_020 Hb_000739_190 Hb_000739_190 Hb_084304_010--Hb_000739_190 Hb_003427_070--Hb_000739_190 Hb_000922_050 Hb_000922_050 Hb_003427_070--Hb_000922_050 Hb_000684_110 Hb_000684_110 Hb_003427_070--Hb_000684_110 Hb_039075_010 Hb_039075_010 Hb_003427_070--Hb_039075_010 Hb_000579_210 Hb_000579_210 Hb_000628_060--Hb_000579_210 Hb_000628_060--Hb_004474_020 Hb_081228_010 Hb_081228_010 Hb_000628_060--Hb_081228_010 Hb_000628_060--Hb_084304_010 Hb_000628_060--Hb_004970_100 Hb_004899_380 Hb_004899_380 Hb_004474_020--Hb_004899_380 Hb_000224_020 Hb_000224_020 Hb_004474_020--Hb_000224_020 Hb_034310_020 Hb_034310_020 Hb_004474_020--Hb_034310_020 Hb_048987_020 Hb_048987_020 Hb_004474_020--Hb_048987_020 Hb_008406_050 Hb_008406_050 Hb_004474_020--Hb_008406_050 Hb_006026_020 Hb_006026_020 Hb_004970_100--Hb_006026_020 Hb_005214_050 Hb_005214_050 Hb_004970_100--Hb_005214_050 Hb_000373_260 Hb_000373_260 Hb_004970_100--Hb_000373_260 Hb_001417_090 Hb_001417_090 Hb_004970_100--Hb_001417_090 Hb_004031_050 Hb_004031_050 Hb_004970_100--Hb_004031_050 Hb_004102_180 Hb_004102_180 Hb_069384_010--Hb_004102_180 Hb_011218_010 Hb_011218_010 Hb_069384_010--Hb_011218_010 Hb_000186_090 Hb_000186_090 Hb_069384_010--Hb_000186_090 Hb_007290_010 Hb_007290_010 Hb_069384_010--Hb_007290_010 Hb_007292_020 Hb_007292_020 Hb_069384_010--Hb_007292_020 Hb_000152_630 Hb_000152_630 Hb_069384_010--Hb_000152_630
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.218822 6.13266 11.3882 52.6582 0.205794 0.128828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.32616 2.12763

CAGE analysis